miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10983 3' -54.3 NC_002794.1 + 128427 0.86 0.159277
Target:  5'- gGGAUGAcCGGGUGGCC-CGCGCGCACg -3'
miRNA:   3'- -CCUGCUuGUCUAUCGGcGCGCGUGUG- -5'
10983 3' -54.3 NC_002794.1 + 182351 0.81 0.292695
Target:  5'- cGGGCGGGCGGGUGaCCGgGCGCACGg -3'
miRNA:   3'- -CCUGCUUGUCUAUcGGCgCGCGUGUg -5'
10983 3' -54.3 NC_002794.1 + 183593 0.78 0.443204
Target:  5'- cGGugGgGGCGGAggggGGCCGCGCGCggccgGCGCc -3'
miRNA:   3'- -CCugC-UUGUCUa---UCGGCGCGCG-----UGUG- -5'
10983 3' -54.3 NC_002794.1 + 139481 0.78 0.452269
Target:  5'- cGGugGugUAGAUGGgCGCGgGCGCGCu -3'
miRNA:   3'- -CCugCuuGUCUAUCgGCGCgCGUGUG- -5'
10983 3' -54.3 NC_002794.1 + 8905 0.77 0.498072
Target:  5'- uGAUGcagaaguaccccaAGCAGGUGGCCGUGCGCACcuGCa -3'
miRNA:   3'- cCUGC-------------UUGUCUAUCGGCGCGCGUG--UG- -5'
10983 3' -54.3 NC_002794.1 + 189176 0.76 0.518332
Target:  5'- aGACG--UAGAUGGCCGCGUGCGCc- -3'
miRNA:   3'- cCUGCuuGUCUAUCGGCGCGCGUGug -5'
10983 3' -54.3 NC_002794.1 + 105557 0.76 0.547818
Target:  5'- cGGGCGAACGGAUAgGgUGCGCGUAgaGCa -3'
miRNA:   3'- -CCUGCUUGUCUAU-CgGCGCGCGUg-UG- -5'
10983 3' -54.3 NC_002794.1 + 23924 0.76 0.547818
Target:  5'- uGGGCGAGCGagcGAUccgagcccGGCCGCG-GCGCACu -3'
miRNA:   3'- -CCUGCUUGU---CUA--------UCGGCGCgCGUGUG- -5'
10983 3' -54.3 NC_002794.1 + 140409 0.75 0.577812
Target:  5'- cGACGuuaucuCGGGUGGCCGCGaCGUACAa -3'
miRNA:   3'- cCUGCuu----GUCUAUCGGCGC-GCGUGUg -5'
10983 3' -54.3 NC_002794.1 + 55976 0.75 0.577812
Target:  5'- aGGugGAugGcGUAGCCGCGgGCgaGCACc -3'
miRNA:   3'- -CCugCUugUcUAUCGGCGCgCG--UGUG- -5'
10983 3' -54.3 NC_002794.1 + 143549 0.75 0.598009
Target:  5'- cGGcACGAGCAcGGUggcccAGCCGUGCGCGC-Cg -3'
miRNA:   3'- -CC-UGCUUGU-CUA-----UCGGCGCGCGUGuG- -5'
10983 3' -54.3 NC_002794.1 + 32555 0.75 0.598009
Target:  5'- aGGaACGGcagccGCGGAUAGUCGCGCGCgGCGg -3'
miRNA:   3'- -CC-UGCU-----UGUCUAUCGGCGCGCG-UGUg -5'
10983 3' -54.3 NC_002794.1 + 58653 0.75 0.608148
Target:  5'- uGGGCGAcgggcugcuGCAGccGGCCGUGCacGCGCACu -3'
miRNA:   3'- -CCUGCU---------UGUCuaUCGGCGCG--CGUGUG- -5'
10983 3' -54.3 NC_002794.1 + 194964 0.75 0.608148
Target:  5'- cGGcACGAacgccggcucguACAGGcacagcGCCGCGCGCACGCc -3'
miRNA:   3'- -CC-UGCU------------UGUCUau----CGGCGCGCGUGUG- -5'
10983 3' -54.3 NC_002794.1 + 156004 0.74 0.625421
Target:  5'- cGGACGAGCgacgggggucucauGGGUcgcAGCCGuCGCGuCGCGCg -3'
miRNA:   3'- -CCUGCUUG--------------UCUA---UCGGC-GCGC-GUGUG- -5'
10983 3' -54.3 NC_002794.1 + 182315 0.74 0.638642
Target:  5'- cGGGCGGACGGGcGGUCGgGCGgGCGg -3'
miRNA:   3'- -CCUGCUUGUCUaUCGGCgCGCgUGUg -5'
10983 3' -54.3 NC_002794.1 + 103592 0.74 0.638642
Target:  5'- cGGuCGGGCAGGcAGCgGCG-GCACGCg -3'
miRNA:   3'- -CCuGCUUGUCUaUCGgCGCgCGUGUG- -5'
10983 3' -54.3 NC_002794.1 + 195013 0.74 0.679191
Target:  5'- cGGGCGAACuccucGA-AGUCGCGCGC-CGCc -3'
miRNA:   3'- -CCUGCUUGu----CUaUCGGCGCGCGuGUG- -5'
10983 3' -54.3 NC_002794.1 + 59132 0.73 0.689253
Target:  5'- aGGcCGAcuucgcGCAG--GGCCGCGuCGCGCACg -3'
miRNA:   3'- -CCuGCU------UGUCuaUCGGCGC-GCGUGUG- -5'
10983 3' -54.3 NC_002794.1 + 190576 0.73 0.689253
Target:  5'- -cGCGAACGGGUAGCUcuCGCGC-CGCa -3'
miRNA:   3'- ccUGCUUGUCUAUCGGc-GCGCGuGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.