miRNA display CGI


Results 21 - 40 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10983 3' -54.3 NC_002794.1 + 93902 0.73 0.689253
Target:  5'- uGGACGGACAGGagugccUAGCCGCGUcCAUc- -3'
miRNA:   3'- -CCUGCUUGUCU------AUCGGCGCGcGUGug -5'
10983 3' -54.3 NC_002794.1 + 59132 0.73 0.689253
Target:  5'- aGGcCGAcuucgcGCAG--GGCCGCGuCGCGCACg -3'
miRNA:   3'- -CCuGCU------UGUCuaUCGGCGC-GCGUGUG- -5'
10983 3' -54.3 NC_002794.1 + 36581 0.73 0.69927
Target:  5'- cGcCGAGCAGGcGGuCCGCGUGcCACACg -3'
miRNA:   3'- cCuGCUUGUCUaUC-GGCGCGC-GUGUG- -5'
10983 3' -54.3 NC_002794.1 + 40311 0.73 0.703261
Target:  5'- aGGAgGGACGGuuuuccucacccGCCGCGCGgACGCg -3'
miRNA:   3'- -CCUgCUUGUCuau---------CGGCGCGCgUGUG- -5'
10983 3' -54.3 NC_002794.1 + 69595 0.73 0.719125
Target:  5'- cGGACGAGCGGGaGGCCGCcuccaCGaccaACGCg -3'
miRNA:   3'- -CCUGCUUGUCUaUCGGCGc----GCg---UGUG- -5'
10983 3' -54.3 NC_002794.1 + 99574 0.72 0.737717
Target:  5'- cGGGCGAgggggguGCGGAgggcgcGGCgGCgGCGCGCGCu -3'
miRNA:   3'- -CCUGCU-------UGUCUa-----UCGgCG-CGCGUGUG- -5'
10983 3' -54.3 NC_002794.1 + 186645 0.72 0.738687
Target:  5'- --cCGcGCGGGUcGGCCGCGCGCACc- -3'
miRNA:   3'- ccuGCuUGUCUA-UCGGCGCGCGUGug -5'
10983 3' -54.3 NC_002794.1 + 72141 0.72 0.738687
Target:  5'- aGGAa-AGCGG-UAGCCGaguaCGCGCACACg -3'
miRNA:   3'- -CCUgcUUGUCuAUCGGC----GCGCGUGUG- -5'
10983 3' -54.3 NC_002794.1 + 70230 0.72 0.738687
Target:  5'- cGGGCGGGCGGccGGCCGCcccGCaGCAgACg -3'
miRNA:   3'- -CCUGCUUGUCuaUCGGCG---CG-CGUgUG- -5'
10983 3' -54.3 NC_002794.1 + 49744 0.72 0.738687
Target:  5'- uGGCGAGCccGUAgGCCGCuCGCACGCg -3'
miRNA:   3'- cCUGCUUGucUAU-CGGCGcGCGUGUG- -5'
10983 3' -54.3 NC_002794.1 + 25125 0.72 0.748335
Target:  5'- aGAuCGAGCGG--GGCaCGCGCGCACGg -3'
miRNA:   3'- cCU-GCUUGUCuaUCG-GCGCGCGUGUg -5'
10983 3' -54.3 NC_002794.1 + 158739 0.72 0.757882
Target:  5'- aGACGGccCGGGUAG-UGUGCGCGCACg -3'
miRNA:   3'- cCUGCUu-GUCUAUCgGCGCGCGUGUG- -5'
10983 3' -54.3 NC_002794.1 + 105206 0.72 0.7645
Target:  5'- cGGACGcggugaucagggucGACAG--GGCCGUGCGCgGCGCc -3'
miRNA:   3'- -CCUGC--------------UUGUCuaUCGGCGCGCG-UGUG- -5'
10983 3' -54.3 NC_002794.1 + 353 0.72 0.766381
Target:  5'- cGACG-GCAGAUuuucacggcaaacGGCCGCGCgauccccgGCACGCu -3'
miRNA:   3'- cCUGCuUGUCUA-------------UCGGCGCG--------CGUGUG- -5'
10983 3' -54.3 NC_002794.1 + 184505 0.72 0.767319
Target:  5'- cGGGCGGcGCGGGcc-CCGCGCGCgGCGCg -3'
miRNA:   3'- -CCUGCU-UGUCUaucGGCGCGCG-UGUG- -5'
10983 3' -54.3 NC_002794.1 + 106780 0.72 0.767319
Target:  5'- aGGACauGAGCAGAUcaAGCCGUcgGCGCAgGg -3'
miRNA:   3'- -CCUG--CUUGUCUA--UCGGCG--CGCGUgUg -5'
10983 3' -54.3 NC_002794.1 + 13102 0.72 0.775712
Target:  5'- gGGACGAggugcguucgGCGGGgucGCCGCGCGgcucgcuCGCGCg -3'
miRNA:   3'- -CCUGCU----------UGUCUau-CGGCGCGC-------GUGUG- -5'
10983 3' -54.3 NC_002794.1 + 60627 0.72 0.785829
Target:  5'- cGGACGGGCGGAcccggcgccGGCgGCGCcggccacccgGCGCGCg -3'
miRNA:   3'- -CCUGCUUGUCUa--------UCGgCGCG----------CGUGUG- -5'
10983 3' -54.3 NC_002794.1 + 48580 0.72 0.785829
Target:  5'- uGGGCGAGcCGGAggAGCgGCGCGU-CGCc -3'
miRNA:   3'- -CCUGCUU-GUCUa-UCGgCGCGCGuGUG- -5'
10983 3' -54.3 NC_002794.1 + 31922 0.72 0.785829
Target:  5'- cGACaGGACGuccAGCCGCGCcGCACGCu -3'
miRNA:   3'- cCUG-CUUGUcuaUCGGCGCG-CGUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.