miRNA display CGI


Results 41 - 60 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10983 3' -54.3 NC_002794.1 + 60627 0.72 0.785829
Target:  5'- cGGACGGGCGGAcccggcgccGGCgGCGCcggccacccgGCGCGCg -3'
miRNA:   3'- -CCUGCUUGUCUa--------UCGgCGCG----------CGUGUG- -5'
10983 3' -54.3 NC_002794.1 + 134931 0.72 0.789468
Target:  5'- cGGGCGGACGGGcUaucuguauguggcgaAGCCGCGCGaccccugcuucCACGCc -3'
miRNA:   3'- -CCUGCUUGUCU-A---------------UCGGCGCGC-----------GUGUG- -5'
10983 3' -54.3 NC_002794.1 + 144417 0.71 0.794883
Target:  5'- uGGGCccGAGCGcccugcugcgccGAgugcAGCCGUGCGCGCACc -3'
miRNA:   3'- -CCUG--CUUGU------------CUa---UCGGCGCGCGUGUG- -5'
10983 3' -54.3 NC_002794.1 + 68275 0.71 0.794883
Target:  5'- cGACGAGCAccGGgccAGCCGgGCGUACGa -3'
miRNA:   3'- cCUGCUUGU--CUa--UCGGCgCGCGUGUg -5'
10983 3' -54.3 NC_002794.1 + 106256 0.71 0.794883
Target:  5'- -cGCGAACcggcGAgcGCCGCGCGuCGCGCc -3'
miRNA:   3'- ccUGCUUGu---CUauCGGCGCGC-GUGUG- -5'
10983 3' -54.3 NC_002794.1 + 45303 0.71 0.794883
Target:  5'- cGACGuGCAGAUcGuuGCGCGCaaaguccagACACa -3'
miRNA:   3'- cCUGCuUGUCUAuCggCGCGCG---------UGUG- -5'
10983 3' -54.3 NC_002794.1 + 187492 0.71 0.803793
Target:  5'- aGGACGAggccgcGCAGGcGGCCaGgGCGCcCGCg -3'
miRNA:   3'- -CCUGCU------UGUCUaUCGG-CgCGCGuGUG- -5'
10983 3' -54.3 NC_002794.1 + 183685 0.71 0.803793
Target:  5'- cGGGuCGAGCGccc-GCCGCGCGCggcgGCACa -3'
miRNA:   3'- -CCU-GCUUGUcuauCGGCGCGCG----UGUG- -5'
10983 3' -54.3 NC_002794.1 + 92428 0.71 0.803793
Target:  5'- cGGGCGAggACAcGcUGGCCGUGCGgggcCGCGCg -3'
miRNA:   3'- -CCUGCU--UGU-CuAUCGGCGCGC----GUGUG- -5'
10983 3' -54.3 NC_002794.1 + 101210 0.71 0.806436
Target:  5'- aGGCGGccgcccgGCAGAUGGUCGUGCccacguuucgcuccgGCGCGCa -3'
miRNA:   3'- cCUGCU-------UGUCUAUCGGCGCG---------------CGUGUG- -5'
10983 3' -54.3 NC_002794.1 + 189955 0.71 0.812549
Target:  5'- cGGACGGaccgACGGAcgGGCCGCcCGCuCGCc -3'
miRNA:   3'- -CCUGCU----UGUCUa-UCGGCGcGCGuGUG- -5'
10983 3' -54.3 NC_002794.1 + 125935 0.71 0.812549
Target:  5'- cGuCGAGCAGuuccucGUGGCCGCcUGCGCGCu -3'
miRNA:   3'- cCuGCUUGUC------UAUCGGCGcGCGUGUG- -5'
10983 3' -54.3 NC_002794.1 + 34645 0.71 0.812549
Target:  5'- uGACGAGCA--UGGCCuaCGCGCGCAg -3'
miRNA:   3'- cCUGCUUGUcuAUCGGc-GCGCGUGUg -5'
10983 3' -54.3 NC_002794.1 + 60686 0.71 0.812549
Target:  5'- cGuCG-ACGGG-AGCCGCGCGCACu- -3'
miRNA:   3'- cCuGCuUGUCUaUCGGCGCGCGUGug -5'
10983 3' -54.3 NC_002794.1 + 109311 0.71 0.812549
Target:  5'- cGACGGucuCGacGAUGGCCGgGCGCuACGCc -3'
miRNA:   3'- cCUGCUu--GU--CUAUCGGCgCGCG-UGUG- -5'
10983 3' -54.3 NC_002794.1 + 182752 0.71 0.821143
Target:  5'- aGACGcgguACAGGUAGCaGC-CGCACGCc -3'
miRNA:   3'- cCUGCu---UGUCUAUCGgCGcGCGUGUG- -5'
10983 3' -54.3 NC_002794.1 + 138971 0.71 0.821143
Target:  5'- cGGCGGACGGGuUGGCCugGCGgGCcuGCGCg -3'
miRNA:   3'- cCUGCUUGUCU-AUCGG--CGCgCG--UGUG- -5'
10983 3' -54.3 NC_002794.1 + 190338 0.71 0.829567
Target:  5'- uGGCGAAgaacugcguCAGGUcgucGGCCGCGCgGCGCAg -3'
miRNA:   3'- cCUGCUU---------GUCUA----UCGGCGCG-CGUGUg -5'
10983 3' -54.3 NC_002794.1 + 15264 0.7 0.837815
Target:  5'- cGGACcguCGGcgAGCCGCGCGgcucccucCGCGCg -3'
miRNA:   3'- -CCUGcuuGUCuaUCGGCGCGC--------GUGUG- -5'
10983 3' -54.3 NC_002794.1 + 192621 0.7 0.843478
Target:  5'- aGGuGCGGACAGucgggcggccgcuccAGCCGCGCcgccGCGCGCu -3'
miRNA:   3'- -CC-UGCUUGUCua-------------UCGGCGCG----CGUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.