miRNA display CGI


Results 21 - 40 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10983 3' -54.3 NC_002794.1 + 60960 0.66 0.969881
Target:  5'- cGACGAGCGccgGGCCuacGCGCGCcuccggacccuccuGCGCg -3'
miRNA:   3'- cCUGCUUGUcuaUCGG---CGCGCG--------------UGUG- -5'
10983 3' -54.3 NC_002794.1 + 192002 0.66 0.96779
Target:  5'- gGGACGGuaGCGGcgGUGGCCGCG-GC-UGCu -3'
miRNA:   3'- -CCUGCU--UGUC--UAUCGGCGCgCGuGUG- -5'
10983 3' -54.3 NC_002794.1 + 94228 0.66 0.96779
Target:  5'- cGACGGGCGGGcgGGCCGgUGaCGgACAUg -3'
miRNA:   3'- cCUGCUUGUCUa-UCGGC-GC-GCgUGUG- -5'
10983 3' -54.3 NC_002794.1 + 140975 0.66 0.96779
Target:  5'- uGGcCGAGCGGAaccacGGCUuCGCcGCGCACu -3'
miRNA:   3'- -CCuGCUUGUCUa----UCGGcGCG-CGUGUG- -5'
10983 3' -54.3 NC_002794.1 + 69512 0.66 0.96779
Target:  5'- -cACGGuCAGGUA-CgGCGCGUGCACg -3'
miRNA:   3'- ccUGCUuGUCUAUcGgCGCGCGUGUG- -5'
10983 3' -54.3 NC_002794.1 + 117367 0.66 0.96779
Target:  5'- ---gGAGCGGcgGGCCGCcUGCACGg -3'
miRNA:   3'- ccugCUUGUCuaUCGGCGcGCGUGUg -5'
10983 3' -54.3 NC_002794.1 + 61282 0.66 0.96779
Target:  5'- -uACGAGCAGGU--CCGCGcCGC-CACc -3'
miRNA:   3'- ccUGCUUGUCUAucGGCGC-GCGuGUG- -5'
10983 3' -54.3 NC_002794.1 + 187678 0.66 0.96779
Target:  5'- cGGGCGAuGCGGGUcgAGCgGCcCGUugGCc -3'
miRNA:   3'- -CCUGCU-UGUCUA--UCGgCGcGCGugUG- -5'
10983 3' -54.3 NC_002794.1 + 147038 0.66 0.966863
Target:  5'- aGGACGAagccgucgGCGGccggucuaaggacggAGCCGCGgGCGCcCg -3'
miRNA:   3'- -CCUGCU--------UGUCua-------------UCGGCGCgCGUGuG- -5'
10983 3' -54.3 NC_002794.1 + 41866 0.66 0.964627
Target:  5'- cGcCGGGCAG--GGCCGgGCGCugcCACg -3'
miRNA:   3'- cCuGCUUGUCuaUCGGCgCGCGu--GUG- -5'
10983 3' -54.3 NC_002794.1 + 53299 0.66 0.964627
Target:  5'- aGGugcCGAGCGGucGGCCG-GCGC-CGCg -3'
miRNA:   3'- -CCu--GCUUGUCuaUCGGCgCGCGuGUG- -5'
10983 3' -54.3 NC_002794.1 + 71280 0.66 0.964627
Target:  5'- cGGuccCGAuACGGAaaaUAGCCGCcgGCGCGCuCg -3'
miRNA:   3'- -CCu--GCU-UGUCU---AUCGGCG--CGCGUGuG- -5'
10983 3' -54.3 NC_002794.1 + 143446 0.66 0.964627
Target:  5'- uGACGGuCAcGAgcccGCCGCGCGCGaugaACg -3'
miRNA:   3'- cCUGCUuGU-CUau--CGGCGCGCGUg---UG- -5'
10983 3' -54.3 NC_002794.1 + 141960 0.66 0.964627
Target:  5'- uGGACGGcCGGGaugaucgAGUCGCagGCGCACGg -3'
miRNA:   3'- -CCUGCUuGUCUa------UCGGCG--CGCGUGUg -5'
10983 3' -54.3 NC_002794.1 + 101436 0.66 0.964627
Target:  5'- cGACGAucCGGGgacGCCgGCGCGCcCGCc -3'
miRNA:   3'- cCUGCUu-GUCUau-CGG-CGCGCGuGUG- -5'
10983 3' -54.3 NC_002794.1 + 175420 0.66 0.964627
Target:  5'- cGG-UGAGC-GAU-GCCGCGgCGCAgACg -3'
miRNA:   3'- -CCuGCUUGuCUAuCGGCGC-GCGUgUG- -5'
10983 3' -54.3 NC_002794.1 + 192934 0.66 0.964627
Target:  5'- aGAUGAACGGccAGCaGCuGCGCAgACa -3'
miRNA:   3'- cCUGCUUGUCuaUCGgCG-CGCGUgUG- -5'
10983 3' -54.3 NC_002794.1 + 63265 0.67 0.961252
Target:  5'- cGGACG-ACGGcccUGGCCGUGguuccuCGCugACg -3'
miRNA:   3'- -CCUGCuUGUCu--AUCGGCGC------GCGugUG- -5'
10983 3' -54.3 NC_002794.1 + 141669 0.67 0.961252
Target:  5'- cGGGuCGAGCgaAGAcgGGUCGC-CGUACGCg -3'
miRNA:   3'- -CCU-GCUUG--UCUa-UCGGCGcGCGUGUG- -5'
10983 3' -54.3 NC_002794.1 + 142301 0.67 0.961252
Target:  5'- aGGCGGuACAGGUggcggaGGCgGCGgCGCAgGCg -3'
miRNA:   3'- cCUGCU-UGUCUA------UCGgCGC-GCGUgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.