miRNA display CGI


Results 41 - 60 of 182 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10983 3' -54.3 NC_002794.1 + 142301 0.67 0.961252
Target:  5'- aGGCGGuACAGGUggcggaGGCgGCGgCGCAgGCg -3'
miRNA:   3'- cCUGCU-UGUCUA------UCGgCGC-GCGUgUG- -5'
10983 3' -54.3 NC_002794.1 + 100566 0.67 0.959123
Target:  5'- uGGcCGAGCGGcAccucuucacgcucgGGCCGUGCGCGC-Cg -3'
miRNA:   3'- -CCuGCUUGUC-Ua-------------UCGGCGCGCGUGuG- -5'
10983 3' -54.3 NC_002794.1 + 47935 0.67 0.957661
Target:  5'- cGAC--GCAGAUcggcGCCGCGCGUcccgGCGCc -3'
miRNA:   3'- cCUGcuUGUCUAu---CGGCGCGCG----UGUG- -5'
10983 3' -54.3 NC_002794.1 + 55800 0.67 0.953848
Target:  5'- -aGCGAgcGCAGcgccgGGCgCGgGCGCGCGCu -3'
miRNA:   3'- ccUGCU--UGUCua---UCG-GCgCGCGUGUG- -5'
10983 3' -54.3 NC_002794.1 + 138283 0.67 0.953848
Target:  5'- aGAUagGAGCGGGUGGCgGCcuuggccCGCACGCu -3'
miRNA:   3'- cCUG--CUUGUCUAUCGgCGc------GCGUGUG- -5'
10983 3' -54.3 NC_002794.1 + 104288 0.67 0.953848
Target:  5'- --cCGAACAGGaucucgGGCCGgGUGCACu- -3'
miRNA:   3'- ccuGCUUGUCUa-----UCGGCgCGCGUGug -5'
10983 3' -54.3 NC_002794.1 + 45005 0.67 0.953848
Target:  5'- cGGACcuguuGCAGAcucgUGGCCGgGUGCuccGCACc -3'
miRNA:   3'- -CCUGcu---UGUCU----AUCGGCgCGCG---UGUG- -5'
10983 3' -54.3 NC_002794.1 + 113370 0.67 0.953848
Target:  5'- cGGaACGGguGCGGGccGCCGuCGUGCAgGCg -3'
miRNA:   3'- -CC-UGCU--UGUCUauCGGC-GCGCGUgUG- -5'
10983 3' -54.3 NC_002794.1 + 126963 0.67 0.953848
Target:  5'- cGACGAccGCgAGAgcGGCCGCGUGUugGu -3'
miRNA:   3'- cCUGCU--UG-UCUa-UCGGCGCGCGugUg -5'
10983 3' -54.3 NC_002794.1 + 114146 0.67 0.953848
Target:  5'- aGGGCGcGCAGGc-GCCGCGUcaGC-CGCu -3'
miRNA:   3'- -CCUGCuUGUCUauCGGCGCG--CGuGUG- -5'
10983 3' -54.3 NC_002794.1 + 122092 0.67 0.953454
Target:  5'- aGACGAACccggaccuGGGcAGCUGCGCgaccaaaccguacGCGCGCa -3'
miRNA:   3'- cCUGCUUG--------UCUaUCGGCGCG-------------CGUGUG- -5'
10983 3' -54.3 NC_002794.1 + 114033 0.67 0.94981
Target:  5'- gGGGC-AGCGGccgcccGUAGUCGC-CGCGCACc -3'
miRNA:   3'- -CCUGcUUGUC------UAUCGGCGcGCGUGUG- -5'
10983 3' -54.3 NC_002794.1 + 58523 0.67 0.94981
Target:  5'- -cACGGGCAcgccGAggccuucGCCGCgGCGCGCGCg -3'
miRNA:   3'- ccUGCUUGU----CUau-----CGGCG-CGCGUGUG- -5'
10983 3' -54.3 NC_002794.1 + 58915 0.67 0.94981
Target:  5'- gGGAUcu-CGGAcguGCCGCGCcuGCACGCc -3'
miRNA:   3'- -CCUGcuuGUCUau-CGGCGCG--CGUGUG- -5'
10983 3' -54.3 NC_002794.1 + 101495 0.67 0.94981
Target:  5'- cGGCGGcCGGuccgAGCgGUGCGgCACACg -3'
miRNA:   3'- cCUGCUuGUCua--UCGgCGCGC-GUGUG- -5'
10983 3' -54.3 NC_002794.1 + 153402 0.67 0.94981
Target:  5'- -cGCGAGCugucgcGAgcGCCGCGCGCGgAg -3'
miRNA:   3'- ccUGCUUGu-----CUauCGGCGCGCGUgUg -5'
10983 3' -54.3 NC_002794.1 + 186301 0.67 0.94981
Target:  5'- aGGCGGcCGGuc-GCCGCG-GCGCGCu -3'
miRNA:   3'- cCUGCUuGUCuauCGGCGCgCGUGUG- -5'
10983 3' -54.3 NC_002794.1 + 145803 0.67 0.948555
Target:  5'- cGGACGAcgacgccgccgccgGCGGcgAGCCGaGCGCGuCGa -3'
miRNA:   3'- -CCUGCU--------------UGUCuaUCGGCgCGCGU-GUg -5'
10983 3' -54.3 NC_002794.1 + 152799 0.67 0.947278
Target:  5'- -cGCGAGCugcugcucccgaucgGGGU-GCCGUGCGgACACg -3'
miRNA:   3'- ccUGCUUG---------------UCUAuCGGCGCGCgUGUG- -5'
10983 3' -54.3 NC_002794.1 + 92300 0.67 0.945544
Target:  5'- cGACGAgGCGG--GGCUGgGCGCGgGCg -3'
miRNA:   3'- cCUGCU-UGUCuaUCGGCgCGCGUgUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.