miRNA display CGI


Results 61 - 80 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10983 3' -54.3 NC_002794.1 + 49943 0.67 0.945544
Target:  5'- uGGACGGGCAGGcgcucccGGUCGC-CGguCGCg -3'
miRNA:   3'- -CCUGCUUGUCUa------UCGGCGcGCguGUG- -5'
10983 3' -54.3 NC_002794.1 + 68810 0.67 0.945544
Target:  5'- aGGACGAcucgagACAGAcggcgacGCCGCcgGCGCuCGCg -3'
miRNA:   3'- -CCUGCU------UGUCUau-----CGGCG--CGCGuGUG- -5'
10983 3' -54.3 NC_002794.1 + 12528 0.67 0.945544
Target:  5'- gGGugGAuuggaaGGAacGCgGCGCGCACGg -3'
miRNA:   3'- -CCugCUug----UCUauCGgCGCGCGUGUg -5'
10983 3' -54.3 NC_002794.1 + 92300 0.67 0.945544
Target:  5'- cGACGAgGCGG--GGCUGgGCGCGgGCg -3'
miRNA:   3'- cCUGCU-UGUCuaUCGGCgCGCGUgUG- -5'
10983 3' -54.3 NC_002794.1 + 131876 0.67 0.945544
Target:  5'- uGGGCGccGCGGccucaucucGGUCGCGCGCGgGCa -3'
miRNA:   3'- -CCUGCu-UGUCua-------UCGGCGCGCGUgUG- -5'
10983 3' -54.3 NC_002794.1 + 81225 0.67 0.942873
Target:  5'- cGuCGuccccccgGGCCGCGCGCGCACc -3'
miRNA:   3'- cCuGCuugucua-UCGGCGCGCGUGUG- -5'
10983 3' -54.3 NC_002794.1 + 34725 0.67 0.941046
Target:  5'- -cACGAggcGCGGGcGGCCGCagaGCGCGCGa -3'
miRNA:   3'- ccUGCU---UGUCUaUCGGCG---CGCGUGUg -5'
10983 3' -54.3 NC_002794.1 + 90452 0.68 0.936315
Target:  5'- aGGCGAGCuuuucggcGA-GGCCGCGCGCgGCGg -3'
miRNA:   3'- cCUGCUUGu-------CUaUCGGCGCGCG-UGUg -5'
10983 3' -54.3 NC_002794.1 + 53628 0.68 0.936315
Target:  5'- cGGACGGACgAGGUcGGCCGagccgGCGUucCGCa -3'
miRNA:   3'- -CCUGCUUG-UCUA-UCGGCg----CGCGu-GUG- -5'
10983 3' -54.3 NC_002794.1 + 188693 0.68 0.936315
Target:  5'- -cGCGGuACAGcucGcCCGUGCGCACGCa -3'
miRNA:   3'- ccUGCU-UGUCuauC-GGCGCGCGUGUG- -5'
10983 3' -54.3 NC_002794.1 + 179296 0.68 0.936315
Target:  5'- -cACGAGCGGAacGCgGCGUGCAUg- -3'
miRNA:   3'- ccUGCUUGUCUauCGgCGCGCGUGug -5'
10983 3' -54.3 NC_002794.1 + 122960 0.68 0.936315
Target:  5'- uGGAgcgUGAGCcugGGGUGGCUGUaCGCGCGCc -3'
miRNA:   3'- -CCU---GCUUG---UCUAUCGGCGcGCGUGUG- -5'
10983 3' -54.3 NC_002794.1 + 102073 0.68 0.936315
Target:  5'- cGGGCGAccugccGCGGGccgacgAGCCGC-CGCcCACg -3'
miRNA:   3'- -CCUGCU------UGUCUa-----UCGGCGcGCGuGUG- -5'
10983 3' -54.3 NC_002794.1 + 192424 0.68 0.936315
Target:  5'- -cGCG-ACGGGUccgcGGCCgGCGCGuCGCGCg -3'
miRNA:   3'- ccUGCuUGUCUA----UCGG-CGCGC-GUGUG- -5'
10983 3' -54.3 NC_002794.1 + 98353 0.68 0.931349
Target:  5'- cGACcGGCcGAUcGCCGCGCgGCugGCg -3'
miRNA:   3'- cCUGcUUGuCUAuCGGCGCG-CGugUG- -5'
10983 3' -54.3 NC_002794.1 + 111733 0.68 0.931349
Target:  5'- cGGGCGAACGcgcucgucGAgcuggcGCCGCGCG-GCGCc -3'
miRNA:   3'- -CCUGCUUGU--------CUau----CGGCGCGCgUGUG- -5'
10983 3' -54.3 NC_002794.1 + 53674 0.68 0.930839
Target:  5'- aGGACGGauccguccgucaaACGGAgcGCCGCGUccuGC-CACu -3'
miRNA:   3'- -CCUGCU-------------UGUCUauCGGCGCG---CGuGUG- -5'
10983 3' -54.3 NC_002794.1 + 111353 0.68 0.926147
Target:  5'- cGGACGAagucgcugucccACAGG-AGCCGC-CGCaacuGCACc -3'
miRNA:   3'- -CCUGCU------------UGUCUaUCGGCGcGCG----UGUG- -5'
10983 3' -54.3 NC_002794.1 + 139424 0.68 0.926147
Target:  5'- aGAUGAuGCAGGUcucguGuCCGCGCGCGC-Cg -3'
miRNA:   3'- cCUGCU-UGUCUAu----C-GGCGCGCGUGuG- -5'
10983 3' -54.3 NC_002794.1 + 11267 0.68 0.926147
Target:  5'- cGGGCGAcGCGGucaccUGGUgGCGCGUcCGCa -3'
miRNA:   3'- -CCUGCU-UGUCu----AUCGgCGCGCGuGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.