miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10983 3' -54.3 NC_002794.1 + 231 0.69 0.882496
Target:  5'- gGGACGGgaaaacgaaacccACcccGGAcuGCCGcCGCGCGCGCg -3'
miRNA:   3'- -CCUGCU-------------UG---UCUauCGGC-GCGCGUGUG- -5'
10983 3' -54.3 NC_002794.1 + 353 0.72 0.766381
Target:  5'- cGACG-GCAGAUuuucacggcaaacGGCCGCGCgauccccgGCACGCu -3'
miRNA:   3'- cCUGCuUGUCUA-------------UCGGCGCG--------CGUGUG- -5'
10983 3' -54.3 NC_002794.1 + 6915 0.69 0.902985
Target:  5'- cGGAUGAugacCAGAagccgcAGCCGcCGCGCgGCACc -3'
miRNA:   3'- -CCUGCUu---GUCUa-----UCGGC-GCGCG-UGUG- -5'
10983 3' -54.3 NC_002794.1 + 8308 0.68 0.915035
Target:  5'- aGGGCGAagGCGGcaccGCCGCGCccCGCGCc -3'
miRNA:   3'- -CCUGCU--UGUCuau-CGGCGCGc-GUGUG- -5'
10983 3' -54.3 NC_002794.1 + 8905 0.77 0.498072
Target:  5'- uGAUGcagaaguaccccaAGCAGGUGGCCGUGCGCACcuGCa -3'
miRNA:   3'- cCUGC-------------UUGUCUAUCGGCGCGCGUG--UG- -5'
10983 3' -54.3 NC_002794.1 + 11267 0.68 0.926147
Target:  5'- cGGGCGAcGCGGucaccUGGUgGCGCGUcCGCa -3'
miRNA:   3'- -CCUGCU-UGUCu----AUCGgCGCGCGuGUG- -5'
10983 3' -54.3 NC_002794.1 + 12528 0.67 0.945544
Target:  5'- gGGugGAuuggaaGGAacGCgGCGCGCACGg -3'
miRNA:   3'- -CCugCUug----UCUauCGgCGCGCGUGUg -5'
10983 3' -54.3 NC_002794.1 + 13102 0.72 0.775712
Target:  5'- gGGACGAggugcguucgGCGGGgucGCCGCGCGgcucgcuCGCGCg -3'
miRNA:   3'- -CCUGCU----------UGUCUau-CGGCGCGC-------GUGUG- -5'
10983 3' -54.3 NC_002794.1 + 14457 0.68 0.915035
Target:  5'- cGGGCGAcCGuGucgAGCgGCGCGcCGCGCu -3'
miRNA:   3'- -CCUGCUuGU-Cua-UCGgCGCGC-GUGUG- -5'
10983 3' -54.3 NC_002794.1 + 14570 0.66 0.973504
Target:  5'- aGGCGAGCcggccgaccgaAGcgGGCCGUGgcgaGCGCGCc -3'
miRNA:   3'- cCUGCUUG-----------UCuaUCGGCGCg---CGUGUG- -5'
10983 3' -54.3 NC_002794.1 + 15264 0.7 0.837815
Target:  5'- cGGACcguCGGcgAGCCGCGCGgcucccucCGCGCg -3'
miRNA:   3'- -CCUGcuuGUCuaUCGGCGCGC--------GUGUG- -5'
10983 3' -54.3 NC_002794.1 + 19499 0.66 0.973504
Target:  5'- cGACGAcgGCGGAggucgcGCCGCucggaGCGCcgGCGCg -3'
miRNA:   3'- cCUGCU--UGUCUau----CGGCG-----CGCG--UGUG- -5'
10983 3' -54.3 NC_002794.1 + 23924 0.76 0.547818
Target:  5'- uGGGCGAGCGagcGAUccgagcccGGCCGCG-GCGCACu -3'
miRNA:   3'- -CCUGCUUGU---CUA--------UCGGCGCgCGUGUG- -5'
10983 3' -54.3 NC_002794.1 + 25125 0.72 0.748335
Target:  5'- aGAuCGAGCGG--GGCaCGCGCGCACGg -3'
miRNA:   3'- cCU-GCUUGUCuaUCG-GCGCGCGUGUg -5'
10983 3' -54.3 NC_002794.1 + 31922 0.72 0.785829
Target:  5'- cGACaGGACGuccAGCCGCGCcGCACGCu -3'
miRNA:   3'- cCUG-CUUGUcuaUCGGCGCG-CGUGUG- -5'
10983 3' -54.3 NC_002794.1 + 32555 0.75 0.598009
Target:  5'- aGGaACGGcagccGCGGAUAGUCGCGCGCgGCGg -3'
miRNA:   3'- -CC-UGCU-----UGUCUAUCGGCGCGCG-UGUg -5'
10983 3' -54.3 NC_002794.1 + 34249 0.69 0.896614
Target:  5'- -cGCGGcugccgccGCAGGcGGaCCGCGCGCAgGCg -3'
miRNA:   3'- ccUGCU--------UGUCUaUC-GGCGCGCGUgUG- -5'
10983 3' -54.3 NC_002794.1 + 34645 0.71 0.812549
Target:  5'- uGACGAGCA--UGGCCuaCGCGCGCAg -3'
miRNA:   3'- cCUGCUUGUcuAUCGGc-GCGCGUGUg -5'
10983 3' -54.3 NC_002794.1 + 34725 0.67 0.941046
Target:  5'- -cACGAggcGCGGGcGGCCGCagaGCGCGCGa -3'
miRNA:   3'- ccUGCU---UGUCUaUCGGCG---CGCGUGUg -5'
10983 3' -54.3 NC_002794.1 + 34761 0.66 0.970747
Target:  5'- cGGugGGACGcGGcacGGCCGCcCGCGC-Ca -3'
miRNA:   3'- -CCugCUUGU-CUa--UCGGCGcGCGUGuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.