miRNA display CGI


Results 21 - 40 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10983 3' -54.3 NC_002794.1 + 34798 0.7 0.861421
Target:  5'- cGGcCGAACcGGcccgGGCCGCGCG-ACACc -3'
miRNA:   3'- -CCuGCUUGuCUa---UCGGCGCGCgUGUG- -5'
10983 3' -54.3 NC_002794.1 + 34849 0.69 0.896614
Target:  5'- cGGGCGu-CGGAgcgggcGCCGCGgGCGcCGCg -3'
miRNA:   3'- -CCUGCuuGUCUau----CGGCGCgCGU-GUG- -5'
10983 3' -54.3 NC_002794.1 + 35497 0.68 0.926147
Target:  5'- aGGACcAGCAGGUgguGGCCGCcGUGCcCAg -3'
miRNA:   3'- -CCUGcUUGUCUA---UCGGCG-CGCGuGUg -5'
10983 3' -54.3 NC_002794.1 + 35544 0.66 0.970747
Target:  5'- -cGCGAGaccCGGc--GCuCGCGCGCGCGCg -3'
miRNA:   3'- ccUGCUU---GUCuauCG-GCGCGCGUGUG- -5'
10983 3' -54.3 NC_002794.1 + 36581 0.73 0.69927
Target:  5'- cGcCGAGCAGGcGGuCCGCGUGcCACACg -3'
miRNA:   3'- cCuGCUUGUCUaUC-GGCGCGC-GUGUG- -5'
10983 3' -54.3 NC_002794.1 + 36763 0.68 0.915035
Target:  5'- uGGCGGACGGccacccagcuGUAGCCGgccgcCGUGUACGCc -3'
miRNA:   3'- cCUGCUUGUC----------UAUCGGC-----GCGCGUGUG- -5'
10983 3' -54.3 NC_002794.1 + 36959 0.69 0.909127
Target:  5'- cGGCG-GCAGGcAGUCGCGCaggaggaucGCGCGCa -3'
miRNA:   3'- cCUGCuUGUCUaUCGGCGCG---------CGUGUG- -5'
10983 3' -54.3 NC_002794.1 + 37582 0.69 0.895964
Target:  5'- cGuCGAACAGAUAGCgGuCGCGauggagcCGCACc -3'
miRNA:   3'- cCuGCUUGUCUAUCGgC-GCGC-------GUGUG- -5'
10983 3' -54.3 NC_002794.1 + 38160 0.7 0.861421
Target:  5'- aGGCGAGCAGGcGGCUGCGCucgGCgACGa -3'
miRNA:   3'- cCUGCUUGUCUaUCGGCGCG---CG-UGUg -5'
10983 3' -54.3 NC_002794.1 + 38442 0.67 0.961252
Target:  5'- cGGGcCGGACuGAggagccggcgcGGCCGCG-GCGCGCc -3'
miRNA:   3'- -CCU-GCUUGuCUa----------UCGGCGCgCGUGUG- -5'
10983 3' -54.3 NC_002794.1 + 40311 0.73 0.703261
Target:  5'- aGGAgGGACGGuuuuccucacccGCCGCGCGgACGCg -3'
miRNA:   3'- -CCUgCUUGUCuau---------CGGCGCGCgUGUG- -5'
10983 3' -54.3 NC_002794.1 + 41866 0.66 0.964627
Target:  5'- cGcCGGGCAG--GGCCGgGCGCugcCACg -3'
miRNA:   3'- cCuGCUUGUCuaUCGGCgCGCGu--GUG- -5'
10983 3' -54.3 NC_002794.1 + 42308 0.68 0.915035
Target:  5'- aGGAUGugguACAGAUAGaCGagGCGCAuCACg -3'
miRNA:   3'- -CCUGCu---UGUCUAUCgGCg-CGCGU-GUG- -5'
10983 3' -54.3 NC_002794.1 + 43171 0.69 0.883191
Target:  5'- cGGCG-ACGGaAUAGCgGuUGCGCGCGCc -3'
miRNA:   3'- cCUGCuUGUC-UAUCGgC-GCGCGUGUG- -5'
10983 3' -54.3 NC_002794.1 + 45005 0.67 0.953848
Target:  5'- cGGACcuguuGCAGAcucgUGGCCGgGUGCuccGCACc -3'
miRNA:   3'- -CCUGcu---UGUCU----AUCGGCgCGCG---UGUG- -5'
10983 3' -54.3 NC_002794.1 + 45303 0.71 0.794883
Target:  5'- cGACGuGCAGAUcGuuGCGCGCaaaguccagACACa -3'
miRNA:   3'- cCUGCuUGUCUAuCggCGCGCG---------UGUG- -5'
10983 3' -54.3 NC_002794.1 + 47935 0.67 0.957661
Target:  5'- cGAC--GCAGAUcggcGCCGCGCGUcccgGCGCc -3'
miRNA:   3'- cCUGcuUGUCUAu---CGGCGCGCG----UGUG- -5'
10983 3' -54.3 NC_002794.1 + 48580 0.72 0.785829
Target:  5'- uGGGCGAGcCGGAggAGCgGCGCGU-CGCc -3'
miRNA:   3'- -CCUGCUU-GUCUa-UCGgCGCGCGuGUG- -5'
10983 3' -54.3 NC_002794.1 + 49744 0.72 0.738687
Target:  5'- uGGCGAGCccGUAgGCCGCuCGCACGCg -3'
miRNA:   3'- cCUGCUUGucUAU-CGGCGcGCGUGUG- -5'
10983 3' -54.3 NC_002794.1 + 49943 0.67 0.945544
Target:  5'- uGGACGGGCAGGcgcucccGGUCGC-CGguCGCg -3'
miRNA:   3'- -CCUGCUUGUCUa------UCGGCGcGCguGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.