miRNA display CGI


Results 41 - 60 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10983 3' -54.3 NC_002794.1 + 53299 0.66 0.964627
Target:  5'- aGGugcCGAGCGGucGGCCG-GCGC-CGCg -3'
miRNA:   3'- -CCu--GCUUGUCuaUCGGCgCGCGuGUG- -5'
10983 3' -54.3 NC_002794.1 + 53628 0.68 0.936315
Target:  5'- cGGACGGACgAGGUcGGCCGagccgGCGUucCGCa -3'
miRNA:   3'- -CCUGCUUG-UCUA-UCGGCg----CGCGu-GUG- -5'
10983 3' -54.3 NC_002794.1 + 53674 0.68 0.930839
Target:  5'- aGGACGGauccguccgucaaACGGAgcGCCGCGUccuGC-CACu -3'
miRNA:   3'- -CCUGCU-------------UGUCUauCGGCGCG---CGuGUG- -5'
10983 3' -54.3 NC_002794.1 + 55800 0.67 0.953848
Target:  5'- -aGCGAgcGCAGcgccgGGCgCGgGCGCGCGCu -3'
miRNA:   3'- ccUGCU--UGUCua---UCG-GCgCGCGUGUG- -5'
10983 3' -54.3 NC_002794.1 + 55854 0.7 0.853748
Target:  5'- uGGAUGGugAuGcgGGCCGCGaucuGCGCGCc -3'
miRNA:   3'- -CCUGCUugU-CuaUCGGCGCg---CGUGUG- -5'
10983 3' -54.3 NC_002794.1 + 55976 0.75 0.577812
Target:  5'- aGGugGAugGcGUAGCCGCGgGCgaGCACc -3'
miRNA:   3'- -CCugCUugUcUAUCGGCGCgCG--UGUG- -5'
10983 3' -54.3 NC_002794.1 + 56081 0.68 0.920709
Target:  5'- aGGGCcAGCA---GGCCGCGCaGCACGu -3'
miRNA:   3'- -CCUGcUUGUcuaUCGGCGCG-CGUGUg -5'
10983 3' -54.3 NC_002794.1 + 56272 0.7 0.853748
Target:  5'- cGGGcCGAGCAGcaGGCgGCagagcacgauGCGCGCGCg -3'
miRNA:   3'- -CCU-GCUUGUCuaUCGgCG----------CGCGUGUG- -5'
10983 3' -54.3 NC_002794.1 + 58523 0.67 0.94981
Target:  5'- -cACGGGCAcgccGAggccuucGCCGCgGCGCGCGCg -3'
miRNA:   3'- ccUGCUUGU----CUau-----CGGCG-CGCGUGUG- -5'
10983 3' -54.3 NC_002794.1 + 58653 0.75 0.608148
Target:  5'- uGGGCGAcgggcugcuGCAGccGGCCGUGCacGCGCACu -3'
miRNA:   3'- -CCUGCU---------UGUCuaUCGGCGCG--CGUGUG- -5'
10983 3' -54.3 NC_002794.1 + 58852 0.68 0.919031
Target:  5'- cGACGuGCAGcUcgucgccgaccggcAGCCGUGCGCGcCGCg -3'
miRNA:   3'- cCUGCuUGUCuA--------------UCGGCGCGCGU-GUG- -5'
10983 3' -54.3 NC_002794.1 + 58915 0.67 0.94981
Target:  5'- gGGAUcu-CGGAcguGCCGCGCcuGCACGCc -3'
miRNA:   3'- -CCUGcuuGUCUau-CGGCGCG--CGUGUG- -5'
10983 3' -54.3 NC_002794.1 + 58952 0.69 0.896614
Target:  5'- aGGACGAGCcgcucuucguGGA-GGCCGaGCGCcuGCGCg -3'
miRNA:   3'- -CCUGCUUG----------UCUaUCGGCgCGCG--UGUG- -5'
10983 3' -54.3 NC_002794.1 + 59132 0.73 0.689253
Target:  5'- aGGcCGAcuucgcGCAG--GGCCGCGuCGCGCACg -3'
miRNA:   3'- -CCuGCU------UGUCuaUCGGCGC-GCGUGUG- -5'
10983 3' -54.3 NC_002794.1 + 59202 0.66 0.976068
Target:  5'- cGACGcGCAcGUcggcgucucGGCCGCG-GCGCGCg -3'
miRNA:   3'- cCUGCuUGUcUA---------UCGGCGCgCGUGUG- -5'
10983 3' -54.3 NC_002794.1 + 60627 0.72 0.785829
Target:  5'- cGGACGGGCGGAcccggcgccGGCgGCGCcggccacccgGCGCGCg -3'
miRNA:   3'- -CCUGCUUGUCUa--------UCGgCGCG----------CGUGUG- -5'
10983 3' -54.3 NC_002794.1 + 60686 0.71 0.812549
Target:  5'- cGuCG-ACGGG-AGCCGCGCGCACu- -3'
miRNA:   3'- cCuGCuUGUCUaUCGGCGCGCGUGug -5'
10983 3' -54.3 NC_002794.1 + 60960 0.66 0.969881
Target:  5'- cGACGAGCGccgGGCCuacGCGCGCcuccggacccuccuGCGCg -3'
miRNA:   3'- cCUGCUUGUcuaUCGG---CGCGCG--------------UGUG- -5'
10983 3' -54.3 NC_002794.1 + 61282 0.66 0.96779
Target:  5'- -uACGAGCAGGU--CCGCGcCGC-CACc -3'
miRNA:   3'- ccUGCUUGUCUAucGGCGC-GCGuGUG- -5'
10983 3' -54.3 NC_002794.1 + 63265 0.67 0.961252
Target:  5'- cGGACG-ACGGcccUGGCCGUGguuccuCGCugACg -3'
miRNA:   3'- -CCUGCuUGUCu--AUCGGCGC------GCGugUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.