miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10983 3' -54.3 NC_002794.1 + 195013 0.74 0.679191
Target:  5'- cGGGCGAACuccucGA-AGUCGCGCGC-CGCc -3'
miRNA:   3'- -CCUGCUUGu----CUaUCGGCGCGCGuGUG- -5'
10983 3' -54.3 NC_002794.1 + 194964 0.75 0.608148
Target:  5'- cGGcACGAacgccggcucguACAGGcacagcGCCGCGCGCACGCc -3'
miRNA:   3'- -CC-UGCU------------UGUCUau----CGGCGCGCGUGUG- -5'
10983 3' -54.3 NC_002794.1 + 192934 0.66 0.964627
Target:  5'- aGAUGAACGGccAGCaGCuGCGCAgACa -3'
miRNA:   3'- cCUGCUUGUCuaUCGgCG-CGCGUgUG- -5'
10983 3' -54.3 NC_002794.1 + 192621 0.7 0.843478
Target:  5'- aGGuGCGGACAGucgggcggccgcuccAGCCGCGCcgccGCGCGCu -3'
miRNA:   3'- -CC-UGCUUGUCua-------------UCGGCGCG----CGUGUG- -5'
10983 3' -54.3 NC_002794.1 + 192424 0.68 0.936315
Target:  5'- -cGCG-ACGGGUccgcGGCCgGCGCGuCGCGCg -3'
miRNA:   3'- ccUGCuUGUCUA----UCGG-CGCGC-GUGUG- -5'
10983 3' -54.3 NC_002794.1 + 192002 0.66 0.96779
Target:  5'- gGGACGGuaGCGGcgGUGGCCGCG-GC-UGCu -3'
miRNA:   3'- -CCUGCU--UGUC--UAUCGGCGCgCGuGUG- -5'
10983 3' -54.3 NC_002794.1 + 190576 0.73 0.689253
Target:  5'- -cGCGAACGGGUAGCUcuCGCGC-CGCa -3'
miRNA:   3'- ccUGCUUGUCUAUCGGc-GCGCGuGUG- -5'
10983 3' -54.3 NC_002794.1 + 190338 0.71 0.829567
Target:  5'- uGGCGAAgaacugcguCAGGUcgucGGCCGCGCgGCGCAg -3'
miRNA:   3'- cCUGCUU---------GUCUA----UCGGCGCG-CGUGUg -5'
10983 3' -54.3 NC_002794.1 + 189955 0.71 0.812549
Target:  5'- cGGACGGaccgACGGAcgGGCCGCcCGCuCGCc -3'
miRNA:   3'- -CCUGCU----UGUCUa-UCGGCGcGCGuGUG- -5'
10983 3' -54.3 NC_002794.1 + 189176 0.76 0.518332
Target:  5'- aGACG--UAGAUGGCCGCGUGCGCc- -3'
miRNA:   3'- cCUGCuuGUCUAUCGGCGCGCGUGug -5'
10983 3' -54.3 NC_002794.1 + 188932 0.66 0.973504
Target:  5'- -aGCGGACAGGcccgcuGuCCGgGCGUGCGCa -3'
miRNA:   3'- ccUGCUUGUCUau----C-GGCgCGCGUGUG- -5'
10983 3' -54.3 NC_002794.1 + 188693 0.68 0.936315
Target:  5'- -cGCGGuACAGcucGcCCGUGCGCACGCa -3'
miRNA:   3'- ccUGCU-UGUCuauC-GGCGCGCGUGUG- -5'
10983 3' -54.3 NC_002794.1 + 188284 0.7 0.845877
Target:  5'- cGGAU--GCAGGgcGCCGCGCGC-CGg -3'
miRNA:   3'- -CCUGcuUGUCUauCGGCGCGCGuGUg -5'
10983 3' -54.3 NC_002794.1 + 187678 0.66 0.96779
Target:  5'- cGGGCGAuGCGGGUcgAGCgGCcCGUugGCc -3'
miRNA:   3'- -CCUGCU-UGUCUA--UCGgCGcGCGugUG- -5'
10983 3' -54.3 NC_002794.1 + 187492 0.71 0.803793
Target:  5'- aGGACGAggccgcGCAGGcGGCCaGgGCGCcCGCg -3'
miRNA:   3'- -CCUGCU------UGUCUaUCGG-CgCGCGuGUG- -5'
10983 3' -54.3 NC_002794.1 + 186645 0.72 0.738687
Target:  5'- --cCGcGCGGGUcGGCCGCGCGCACc- -3'
miRNA:   3'- ccuGCuUGUCUA-UCGGCGCGCGUGug -5'
10983 3' -54.3 NC_002794.1 + 186301 0.67 0.94981
Target:  5'- aGGCGGcCGGuc-GCCGCG-GCGCGCu -3'
miRNA:   3'- cCUGCUuGUCuauCGGCGCgCGUGUG- -5'
10983 3' -54.3 NC_002794.1 + 184505 0.72 0.767319
Target:  5'- cGGGCGGcGCGGGcc-CCGCGCGCgGCGCg -3'
miRNA:   3'- -CCUGCU-UGUCUaucGGCGCGCG-UGUG- -5'
10983 3' -54.3 NC_002794.1 + 183685 0.71 0.803793
Target:  5'- cGGGuCGAGCGccc-GCCGCGCGCggcgGCACa -3'
miRNA:   3'- -CCU-GCUUGUcuauCGGCGCGCG----UGUG- -5'
10983 3' -54.3 NC_002794.1 + 183593 0.78 0.443204
Target:  5'- cGGugGgGGCGGAggggGGCCGCGCGCggccgGCGCc -3'
miRNA:   3'- -CCugC-UUGUCUa---UCGGCGCGCG-----UGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.