miRNA display CGI


Results 21 - 40 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10983 3' -54.3 NC_002794.1 + 182752 0.71 0.821143
Target:  5'- aGACGcgguACAGGUAGCaGC-CGCACGCc -3'
miRNA:   3'- cCUGCu---UGUCUAUCGgCGcGCGUGUG- -5'
10983 3' -54.3 NC_002794.1 + 182587 0.69 0.909127
Target:  5'- cGGGCGAc--GAUGGUCGCGUugucGCGCAa -3'
miRNA:   3'- -CCUGCUuguCUAUCGGCGCG----CGUGUg -5'
10983 3' -54.3 NC_002794.1 + 182351 0.81 0.292695
Target:  5'- cGGGCGGGCGGGUGaCCGgGCGCACGg -3'
miRNA:   3'- -CCUGCUUGUCUAUcGGCgCGCGUGUg -5'
10983 3' -54.3 NC_002794.1 + 182315 0.74 0.638642
Target:  5'- cGGGCGGACGGGcGGUCGgGCGgGCGg -3'
miRNA:   3'- -CCUGCUUGUCUaUCGGCgCGCgUGUg -5'
10983 3' -54.3 NC_002794.1 + 181744 0.66 0.976068
Target:  5'- -cGCGAGCGGccGGCCaGCcCGCugACg -3'
miRNA:   3'- ccUGCUUGUCuaUCGG-CGcGCGugUG- -5'
10983 3' -54.3 NC_002794.1 + 179296 0.68 0.936315
Target:  5'- -cACGAGCGGAacGCgGCGUGCAUg- -3'
miRNA:   3'- ccUGCUUGUCUauCGgCGCGCGUGug -5'
10983 3' -54.3 NC_002794.1 + 175420 0.66 0.964627
Target:  5'- cGG-UGAGC-GAU-GCCGCGgCGCAgACg -3'
miRNA:   3'- -CCuGCUUGuCUAuCGGCGC-GCGUgUG- -5'
10983 3' -54.3 NC_002794.1 + 158739 0.72 0.757882
Target:  5'- aGACGGccCGGGUAG-UGUGCGCGCACg -3'
miRNA:   3'- cCUGCUu-GUCUAUCgGCGCGCGUGUG- -5'
10983 3' -54.3 NC_002794.1 + 156004 0.74 0.625421
Target:  5'- cGGACGAGCgacgggggucucauGGGUcgcAGCCGuCGCGuCGCGCg -3'
miRNA:   3'- -CCUGCUUG--------------UCUA---UCGGC-GCGC-GUGUG- -5'
10983 3' -54.3 NC_002794.1 + 153402 0.67 0.94981
Target:  5'- -cGCGAGCugucgcGAgcGCCGCGCGCGgAg -3'
miRNA:   3'- ccUGCUUGu-----CUauCGGCGCGCGUgUg -5'
10983 3' -54.3 NC_002794.1 + 152799 0.67 0.947278
Target:  5'- -cGCGAGCugcugcucccgaucgGGGU-GCCGUGCGgACACg -3'
miRNA:   3'- ccUGCUUG---------------UCUAuCGGCGCGCgUGUG- -5'
10983 3' -54.3 NC_002794.1 + 152219 0.66 0.973504
Target:  5'- aGGCGu-CGGAc-GUCGCGCGC-CACg -3'
miRNA:   3'- cCUGCuuGUCUauCGGCGCGCGuGUG- -5'
10983 3' -54.3 NC_002794.1 + 151482 0.66 0.970747
Target:  5'- aGGACG-ACGaGUGGCUGUacaaacGCGUGCGCu -3'
miRNA:   3'- -CCUGCuUGUcUAUCGGCG------CGCGUGUG- -5'
10983 3' -54.3 NC_002794.1 + 151050 0.69 0.909127
Target:  5'- cGGGCGAguGCAc--GGCCGCGCaGguCGCg -3'
miRNA:   3'- -CCUGCU--UGUcuaUCGGCGCG-CguGUG- -5'
10983 3' -54.3 NC_002794.1 + 150302 0.69 0.90547
Target:  5'- uGGugGcAGCGGAUcaccGGCCGCGUcuacgugcaguggacGCACGg -3'
miRNA:   3'- -CCugC-UUGUCUA----UCGGCGCG---------------CGUGUg -5'
10983 3' -54.3 NC_002794.1 + 150208 0.69 0.883191
Target:  5'- cGACGAGCGGcugcugccgAGCUGCGUGCGacgGCa -3'
miRNA:   3'- cCUGCUUGUCua-------UCGGCGCGCGUg--UG- -5'
10983 3' -54.3 NC_002794.1 + 147038 0.66 0.966863
Target:  5'- aGGACGAagccgucgGCGGccggucuaaggacggAGCCGCGgGCGCcCg -3'
miRNA:   3'- -CCUGCU--------UGUCua-------------UCGGCGCgCGUGuG- -5'
10983 3' -54.3 NC_002794.1 + 145803 0.67 0.948555
Target:  5'- cGGACGAcgacgccgccgccgGCGGcgAGCCGaGCGCGuCGa -3'
miRNA:   3'- -CCUGCU--------------UGUCuaUCGGCgCGCGU-GUg -5'
10983 3' -54.3 NC_002794.1 + 144417 0.71 0.794883
Target:  5'- uGGGCccGAGCGcccugcugcgccGAgugcAGCCGUGCGCGCACc -3'
miRNA:   3'- -CCUG--CUUGU------------CUa---UCGGCGCGCGUGUG- -5'
10983 3' -54.3 NC_002794.1 + 143549 0.75 0.598009
Target:  5'- cGGcACGAGCAcGGUggcccAGCCGUGCGCGC-Cg -3'
miRNA:   3'- -CC-UGCUUGU-CUA-----UCGGCGCGCGUGuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.