Results 1 - 20 of 182 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10983 | 3' | -54.3 | NC_002794.1 | + | 128427 | 0.86 | 0.159277 |
Target: 5'- gGGAUGAcCGGGUGGCC-CGCGCGCACg -3' miRNA: 3'- -CCUGCUuGUCUAUCGGcGCGCGUGUG- -5' |
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10983 | 3' | -54.3 | NC_002794.1 | + | 67304 | 0.66 | 0.973504 |
Target: 5'- cGACGAccCAGGUcgGGUCGCGCccGUACAUc -3' miRNA: 3'- cCUGCUu-GUCUA--UCGGCGCG--CGUGUG- -5' |
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10983 | 3' | -54.3 | NC_002794.1 | + | 14570 | 0.66 | 0.973504 |
Target: 5'- aGGCGAGCcggccgaccgaAGcgGGCCGUGgcgaGCGCGCc -3' miRNA: 3'- cCUGCUUG-----------UCuaUCGGCGCg---CGUGUG- -5' |
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10983 | 3' | -54.3 | NC_002794.1 | + | 152219 | 0.66 | 0.973504 |
Target: 5'- aGGCGu-CGGAc-GUCGCGCGC-CACg -3' miRNA: 3'- cCUGCuuGUCUauCGGCGCGCGuGUG- -5' |
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10983 | 3' | -54.3 | NC_002794.1 | + | 87842 | 0.66 | 0.973504 |
Target: 5'- -cGCGcGCAuAUAcCCGCGCGUGCGCg -3' miRNA: 3'- ccUGCuUGUcUAUcGGCGCGCGUGUG- -5' |
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10983 | 3' | -54.3 | NC_002794.1 | + | 151482 | 0.66 | 0.970747 |
Target: 5'- aGGACG-ACGaGUGGCUGUacaaacGCGUGCGCu -3' miRNA: 3'- -CCUGCuUGUcUAUCGGCG------CGCGUGUG- -5' |
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10983 | 3' | -54.3 | NC_002794.1 | + | 102679 | 0.66 | 0.970747 |
Target: 5'- uGGGCGAcCGGGU-GUCGUacGUGCugACg -3' miRNA: 3'- -CCUGCUuGUCUAuCGGCG--CGCGugUG- -5' |
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10983 | 3' | -54.3 | NC_002794.1 | + | 34761 | 0.66 | 0.970747 |
Target: 5'- cGGugGGACGcGGcacGGCCGCcCGCGC-Ca -3' miRNA: 3'- -CCugCUUGU-CUa--UCGGCGcGCGUGuG- -5' |
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10983 | 3' | -54.3 | NC_002794.1 | + | 192002 | 0.66 | 0.96779 |
Target: 5'- gGGACGGuaGCGGcgGUGGCCGCG-GC-UGCu -3' miRNA: 3'- -CCUGCU--UGUC--UAUCGGCGCgCGuGUG- -5' |
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10983 | 3' | -54.3 | NC_002794.1 | + | 188932 | 0.66 | 0.973504 |
Target: 5'- -aGCGGACAGGcccgcuGuCCGgGCGUGCGCa -3' miRNA: 3'- ccUGCUUGUCUau----C-GGCgCGCGUGUG- -5' |
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10983 | 3' | -54.3 | NC_002794.1 | + | 69784 | 0.66 | 0.973504 |
Target: 5'- cGACGAGCcacgAGAgcGCCGCcGCGUAgccCGCc -3' miRNA: 3'- cCUGCUUG----UCUauCGGCG-CGCGU---GUG- -5' |
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10983 | 3' | -54.3 | NC_002794.1 | + | 92500 | 0.66 | 0.973504 |
Target: 5'- uGGACGAgGCGGccAUGGCCcugguguccgagGUGCGCAUg- -3' miRNA: 3'- -CCUGCU-UGUC--UAUCGG------------CGCGCGUGug -5' |
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10983 | 3' | -54.3 | NC_002794.1 | + | 115577 | 0.66 | 0.976068 |
Target: 5'- cGGCGAACGGGacgUAGCgGCuGCGguCGa -3' miRNA: 3'- cCUGCUUGUCU---AUCGgCG-CGCguGUg -5' |
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10983 | 3' | -54.3 | NC_002794.1 | + | 59202 | 0.66 | 0.976068 |
Target: 5'- cGACGcGCAcGUcggcgucucGGCCGCG-GCGCGCg -3' miRNA: 3'- cCUGCuUGUcUA---------UCGGCGCgCGUGUG- -5' |
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10983 | 3' | -54.3 | NC_002794.1 | + | 81581 | 0.66 | 0.976068 |
Target: 5'- cGGACGAagaagaagACGGAcccgcggccggAGUCGCGgacgaGCACGCg -3' miRNA: 3'- -CCUGCU--------UGUCUa----------UCGGCGCg----CGUGUG- -5' |
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10983 | 3' | -54.3 | NC_002794.1 | + | 91229 | 0.66 | 0.976068 |
Target: 5'- cGGACGGcgcgGCGGccgucgGGCUGCGCucGCGgACg -3' miRNA: 3'- -CCUGCU----UGUCua----UCGGCGCG--CGUgUG- -5' |
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10983 | 3' | -54.3 | NC_002794.1 | + | 114641 | 0.66 | 0.973504 |
Target: 5'- cGGAgcuCGAGCugccGGUGcuguUCGCGCGCGCGCc -3' miRNA: 3'- -CCU---GCUUGu---CUAUc---GGCGCGCGUGUG- -5' |
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10983 | 3' | -54.3 | NC_002794.1 | + | 19499 | 0.66 | 0.973504 |
Target: 5'- cGACGAcgGCGGAggucgcGCCGCucggaGCGCcgGCGCg -3' miRNA: 3'- cCUGCU--UGUCUau----CGGCG-----CGCG--UGUG- -5' |
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10983 | 3' | -54.3 | NC_002794.1 | + | 118831 | 0.66 | 0.976068 |
Target: 5'- aGGACGAGaugaAGAgcgugucGCUGaCGCGCuCGCa -3' miRNA: 3'- -CCUGCUUg---UCUau-----CGGC-GCGCGuGUG- -5' |
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10983 | 3' | -54.3 | NC_002794.1 | + | 181744 | 0.66 | 0.976068 |
Target: 5'- -cGCGAGCGGccGGCCaGCcCGCugACg -3' miRNA: 3'- ccUGCUUGUCuaUCGG-CGcGCGugUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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