miRNA display CGI


Results 41 - 60 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10983 3' -54.3 NC_002794.1 + 114641 0.66 0.973504
Target:  5'- cGGAgcuCGAGCugccGGUGcuguUCGCGCGCGCGCc -3'
miRNA:   3'- -CCU---GCUUGu---CUAUc---GGCGCGCGUGUG- -5'
10983 3' -54.3 NC_002794.1 + 91229 0.66 0.976068
Target:  5'- cGGACGGcgcgGCGGccgucgGGCUGCGCucGCGgACg -3'
miRNA:   3'- -CCUGCU----UGUCua----UCGGCGCG--CGUgUG- -5'
10983 3' -54.3 NC_002794.1 + 81581 0.66 0.976068
Target:  5'- cGGACGAagaagaagACGGAcccgcggccggAGUCGCGgacgaGCACGCg -3'
miRNA:   3'- -CCUGCU--------UGUCUa----------UCGGCGCg----CGUGUG- -5'
10983 3' -54.3 NC_002794.1 + 59202 0.66 0.976068
Target:  5'- cGACGcGCAcGUcggcgucucGGCCGCG-GCGCGCg -3'
miRNA:   3'- cCUGCuUGUcUA---------UCGGCGCgCGUGUG- -5'
10983 3' -54.3 NC_002794.1 + 115577 0.66 0.976068
Target:  5'- cGGCGAACGGGacgUAGCgGCuGCGguCGa -3'
miRNA:   3'- cCUGCUUGUCU---AUCGgCG-CGCguGUg -5'
10983 3' -54.3 NC_002794.1 + 152219 0.66 0.973504
Target:  5'- aGGCGu-CGGAc-GUCGCGCGC-CACg -3'
miRNA:   3'- cCUGCuuGUCUauCGGCGCGCGuGUG- -5'
10983 3' -54.3 NC_002794.1 + 87842 0.66 0.973504
Target:  5'- -cGCGcGCAuAUAcCCGCGCGUGCGCg -3'
miRNA:   3'- ccUGCuUGUcUAUcGGCGCGCGUGUG- -5'
10983 3' -54.3 NC_002794.1 + 147038 0.66 0.966863
Target:  5'- aGGACGAagccgucgGCGGccggucuaaggacggAGCCGCGgGCGCcCg -3'
miRNA:   3'- -CCUGCU--------UGUCua-------------UCGGCGCgCGUGuG- -5'
10983 3' -54.3 NC_002794.1 + 94228 0.66 0.96779
Target:  5'- cGACGGGCGGGcgGGCCGgUGaCGgACAUg -3'
miRNA:   3'- cCUGCUUGUCUa-UCGGC-GC-GCgUGUG- -5'
10983 3' -54.3 NC_002794.1 + 140975 0.66 0.96779
Target:  5'- uGGcCGAGCGGAaccacGGCUuCGCcGCGCACu -3'
miRNA:   3'- -CCuGCUUGUCUa----UCGGcGCG-CGUGUG- -5'
10983 3' -54.3 NC_002794.1 + 69512 0.66 0.96779
Target:  5'- -cACGGuCAGGUA-CgGCGCGUGCACg -3'
miRNA:   3'- ccUGCUuGUCUAUcGgCGCGCGUGUG- -5'
10983 3' -54.3 NC_002794.1 + 117367 0.66 0.96779
Target:  5'- ---gGAGCGGcgGGCCGCcUGCACGg -3'
miRNA:   3'- ccugCUUGUCuaUCGGCGcGCGUGUg -5'
10983 3' -54.3 NC_002794.1 + 61282 0.66 0.96779
Target:  5'- -uACGAGCAGGU--CCGCGcCGC-CACc -3'
miRNA:   3'- ccUGCUUGUCUAucGGCGC-GCGuGUG- -5'
10983 3' -54.3 NC_002794.1 + 187678 0.66 0.96779
Target:  5'- cGGGCGAuGCGGGUcgAGCgGCcCGUugGCc -3'
miRNA:   3'- -CCUGCU-UGUCUA--UCGgCGcGCGugUG- -5'
10983 3' -54.3 NC_002794.1 + 35544 0.66 0.970747
Target:  5'- -cGCGAGaccCGGc--GCuCGCGCGCGCGCg -3'
miRNA:   3'- ccUGCUU---GUCuauCG-GCGCGCGUGUG- -5'
10983 3' -54.3 NC_002794.1 + 60960 0.66 0.969881
Target:  5'- cGACGAGCGccgGGCCuacGCGCGCcuccggacccuccuGCGCg -3'
miRNA:   3'- cCUGCUUGUcuaUCGG---CGCGCG--------------UGUG- -5'
10983 3' -54.3 NC_002794.1 + 192002 0.66 0.96779
Target:  5'- gGGACGGuaGCGGcgGUGGCCGCG-GC-UGCu -3'
miRNA:   3'- -CCUGCU--UGUC--UAUCGGCGCgCGuGUG- -5'
10983 3' -54.3 NC_002794.1 + 34761 0.66 0.970747
Target:  5'- cGGugGGACGcGGcacGGCCGCcCGCGC-Ca -3'
miRNA:   3'- -CCugCUUGU-CUa--UCGGCGcGCGUGuG- -5'
10983 3' -54.3 NC_002794.1 + 102679 0.66 0.970747
Target:  5'- uGGGCGAcCGGGU-GUCGUacGUGCugACg -3'
miRNA:   3'- -CCUGCUuGUCUAuCGGCG--CGCGugUG- -5'
10983 3' -54.3 NC_002794.1 + 151482 0.66 0.970747
Target:  5'- aGGACG-ACGaGUGGCUGUacaaacGCGUGCGCu -3'
miRNA:   3'- -CCUGCuUGUcUAUCGGCG------CGCGUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.