miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10984 3' -52.7 NC_002794.1 + 191790 0.66 0.990282
Target:  5'- cGAACGuucgcucgacCGCCCGCUcggccgcucgaGGACCGCGa- -3'
miRNA:   3'- uCUUGUua--------GCGGGCGA-----------CUUGGUGCag -5'
10984 3' -52.7 NC_002794.1 + 195289 0.66 0.990282
Target:  5'- -cGACccgCGCaCCGCUGcacgcaccGCCGCGUCg -3'
miRNA:   3'- ucUUGuuaGCG-GGCGACu-------UGGUGCAG- -5'
10984 3' -52.7 NC_002794.1 + 113493 0.66 0.990282
Target:  5'- aGGAGC--UCGCgCGCggccgaGAGCCGCGg- -3'
miRNA:   3'- -UCUUGuuAGCGgGCGa-----CUUGGUGCag -5'
10984 3' -52.7 NC_002794.1 + 115294 0.66 0.990282
Target:  5'- gGGAACGGgga-CCGCUGcGCCGcCGUCc -3'
miRNA:   3'- -UCUUGUUagcgGGCGACuUGGU-GCAG- -5'
10984 3' -52.7 NC_002794.1 + 133253 0.66 0.990282
Target:  5'- -aGACAGUCGCUCGCUcaccgggaGAcUCGCGUg -3'
miRNA:   3'- ucUUGUUAGCGGGCGA--------CUuGGUGCAg -5'
10984 3' -52.7 NC_002794.1 + 177341 0.66 0.989897
Target:  5'- cGAGCGGUgggcucgacgauagCGCUCGCUcGGAUCACGg- -3'
miRNA:   3'- uCUUGUUA--------------GCGGGCGA-CUUGGUGCag -5'
10984 3' -52.7 NC_002794.1 + 48629 0.66 0.988952
Target:  5'- cGGAGCGgccGUCgggGCCCGC-GAGCCGCc-- -3'
miRNA:   3'- -UCUUGU---UAG---CGGGCGaCUUGGUGcag -5'
10984 3' -52.7 NC_002794.1 + 110843 0.66 0.988952
Target:  5'- cGGGCcuucaCGaUCCGCUGGAaguCCACGUCg -3'
miRNA:   3'- uCUUGuua--GC-GGGCGACUU---GGUGCAG- -5'
10984 3' -52.7 NC_002794.1 + 184448 0.66 0.988952
Target:  5'- uGAGCGcgccgcugcCGCCCGC-GGGCCGCG-Cg -3'
miRNA:   3'- uCUUGUua-------GCGGGCGaCUUGGUGCaG- -5'
10984 3' -52.7 NC_002794.1 + 123938 0.66 0.988952
Target:  5'- cGGGCAccgCGUaCCGuCUGAGCCGCG-Cg -3'
miRNA:   3'- uCUUGUua-GCG-GGC-GACUUGGUGCaG- -5'
10984 3' -52.7 NC_002794.1 + 194256 0.66 0.987485
Target:  5'- cGAACAGcUCGCCCGac--GCCGCcUCg -3'
miRNA:   3'- uCUUGUU-AGCGGGCgacuUGGUGcAG- -5'
10984 3' -52.7 NC_002794.1 + 193493 0.66 0.987485
Target:  5'- -cAACAGuUCGCCCGCgu-GCCAC-UCc -3'
miRNA:   3'- ucUUGUU-AGCGGGCGacuUGGUGcAG- -5'
10984 3' -52.7 NC_002794.1 + 57892 0.66 0.98733
Target:  5'- -----cGUCGCCUGCUacuucuacaacaaGGACCGCGUg -3'
miRNA:   3'- ucuuguUAGCGGGCGA-------------CUUGGUGCAg -5'
10984 3' -52.7 NC_002794.1 + 187904 0.66 0.987016
Target:  5'- cGGuGCcgcUCGCCCGCcGGGCCccgccgcgaccgucGCGUCa -3'
miRNA:   3'- -UCuUGuu-AGCGGGCGaCUUGG--------------UGCAG- -5'
10984 3' -52.7 NC_002794.1 + 20438 0.66 0.985871
Target:  5'- cGGAGgAcgUGCaCCGCUgGAGCCGCcUCu -3'
miRNA:   3'- -UCUUgUuaGCG-GGCGA-CUUGGUGcAG- -5'
10984 3' -52.7 NC_002794.1 + 41752 0.66 0.985871
Target:  5'- uGAGCGA--GCCCGCUuccacgGAgaucagcccgGCCGCGUCc -3'
miRNA:   3'- uCUUGUUagCGGGCGA------CU----------UGGUGCAG- -5'
10984 3' -52.7 NC_002794.1 + 123382 0.66 0.985871
Target:  5'- -cAGCGGUCugcacacCCUGCUGcuCCGCGUCg -3'
miRNA:   3'- ucUUGUUAGc------GGGCGACuuGGUGCAG- -5'
10984 3' -52.7 NC_002794.1 + 152195 0.66 0.98465
Target:  5'- uGAACAcgGUcgcguucCGCCCGgaGGcgucggacgucgcgcGCCACGUCg -3'
miRNA:   3'- uCUUGU--UA-------GCGGGCgaCU---------------UGGUGCAG- -5'
10984 3' -52.7 NC_002794.1 + 62340 0.66 0.984103
Target:  5'- cGGAGCccgCGCCgGCgc-ACCugGUCu -3'
miRNA:   3'- -UCUUGuuaGCGGgCGacuUGGugCAG- -5'
10984 3' -52.7 NC_002794.1 + 124260 0.66 0.984103
Target:  5'- cGggUAGUCGCCgGCcagccGCCGCGcCg -3'
miRNA:   3'- uCuuGUUAGCGGgCGacu--UGGUGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.