miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10984 5' -62.2 NC_002794.1 + 143554 0.66 0.69019
Target:  5'- cGAgcacGGUGGCCCAgCCGugcgcgccGUCCUcGGCg- -3'
miRNA:   3'- aCU----UCGCCGGGUgGGC--------CAGGA-CCGau -5'
10984 5' -62.2 NC_002794.1 + 92504 0.66 0.69019
Target:  5'- cGAGGCGGCCa---UGGcCCUGGUg- -3'
miRNA:   3'- aCUUCGCCGGguggGCCaGGACCGau -5'
10984 5' -62.2 NC_002794.1 + 93020 0.66 0.680507
Target:  5'- gUGcAGCGGCggaACCCGGUgcgcggcugCCUGGCc- -3'
miRNA:   3'- -ACuUCGCCGgg-UGGGCCA---------GGACCGau -5'
10984 5' -62.2 NC_002794.1 + 180622 0.66 0.680507
Target:  5'- cGAcacGGCGGCCCACCCGcGcUCCa----- -3'
miRNA:   3'- aCU---UCGCCGGGUGGGC-C-AGGaccgau -5'
10984 5' -62.2 NC_002794.1 + 96347 0.66 0.680507
Target:  5'- gGAGGaucuGGUCCGCCUGG-CCgagGGCa- -3'
miRNA:   3'- aCUUCg---CCGGGUGGGCCaGGa--CCGau -5'
10984 5' -62.2 NC_002794.1 + 178525 0.66 0.661038
Target:  5'- aGAuAGCGGUCCGCuaGGUCCc-GCUGc -3'
miRNA:   3'- aCU-UCGCCGGGUGggCCAGGacCGAU- -5'
10984 5' -62.2 NC_002794.1 + 104451 0.66 0.651268
Target:  5'- -cGGGCGGCCCgaGCCCGGgcggCgUGuGCa- -3'
miRNA:   3'- acUUCGCCGGG--UGGGCCa---GgAC-CGau -5'
10984 5' -62.2 NC_002794.1 + 59511 0.67 0.631694
Target:  5'- cGAcGGCGGCUucccgcugCACCCGG-CgCUGGCg- -3'
miRNA:   3'- aCU-UCGCCGG--------GUGGGCCaG-GACCGau -5'
10984 5' -62.2 NC_002794.1 + 125012 0.67 0.631694
Target:  5'- cGAAGCGGUCCgcggcggccgucACCaCGGcgcagaUCCUGGUg- -3'
miRNA:   3'- aCUUCGCCGGG------------UGG-GCC------AGGACCGau -5'
10984 5' -62.2 NC_002794.1 + 178796 0.67 0.631694
Target:  5'- gGAAgGCGGCUCgGCCCGGggggaCCgGGCa- -3'
miRNA:   3'- aCUU-CGCCGGG-UGGGCCa----GGaCCGau -5'
10984 5' -62.2 NC_002794.1 + 96756 0.67 0.621903
Target:  5'- cGcAAGCGGCCggcggucgaguCGCCCGGgguccUCCUGGaCUu -3'
miRNA:   3'- aC-UUCGCCGG-----------GUGGGCC-----AGGACC-GAu -5'
10984 5' -62.2 NC_002794.1 + 87046 0.67 0.621903
Target:  5'- cGgcGCGGCUCgggGCCgGGUCCUGuaGCg- -3'
miRNA:   3'- aCuuCGCCGGG---UGGgCCAGGAC--CGau -5'
10984 5' -62.2 NC_002794.1 + 68430 0.67 0.621903
Target:  5'- --cGGUGGCCCACCaccgcuGGUuccgCCUGGCc- -3'
miRNA:   3'- acuUCGCCGGGUGGg-----CCA----GGACCGau -5'
10984 5' -62.2 NC_002794.1 + 151884 0.67 0.61212
Target:  5'- gGAAGUGGCCCucgauucggcGCCCcagagCCUGGCc- -3'
miRNA:   3'- aCUUCGCCGGG----------UGGGcca--GGACCGau -5'
10984 5' -62.2 NC_002794.1 + 44440 0.67 0.61212
Target:  5'- cGAcaccGGCGcGCCCGCCCGGaCgUcGGCg- -3'
miRNA:   3'- aCU----UCGC-CGGGUGGGCCaGgA-CCGau -5'
10984 5' -62.2 NC_002794.1 + 149862 0.67 0.61212
Target:  5'- aGGAGCGgccGCCCGCUCGGggggUCUGGg-- -3'
miRNA:   3'- aCUUCGC---CGGGUGGGCCa---GGACCgau -5'
10984 5' -62.2 NC_002794.1 + 86903 0.67 0.592601
Target:  5'- cGggGCcGCCgACCCGGUgacgcCCgUGGCg- -3'
miRNA:   3'- aCuuCGcCGGgUGGGCCA-----GG-ACCGau -5'
10984 5' -62.2 NC_002794.1 + 108455 0.67 0.592601
Target:  5'- gGcGGCGGCCCGCCggcaCGGgCCgaggGGCg- -3'
miRNA:   3'- aCuUCGCCGGGUGG----GCCaGGa---CCGau -5'
10984 5' -62.2 NC_002794.1 + 101208 0.67 0.592601
Target:  5'- gGAGGCGG-CCGCCCGG-CagaUGGUc- -3'
miRNA:   3'- aCUUCGCCgGGUGGGCCaGg--ACCGau -5'
10984 5' -62.2 NC_002794.1 + 113680 0.67 0.589681
Target:  5'- -cGAGCaGGCCCGCCaCcgucggcagcgccaGGUUCUGGCUc -3'
miRNA:   3'- acUUCG-CCGGGUGG-G--------------CCAGGACCGAu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.