miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10985 3' -50 NC_002794.1 + 62491 0.66 0.999626
Target:  5'- gCGcgaGUgGACGGC--GGGCGGCGCCg -3'
miRNA:   3'- -GCaagUAgCUGCUGacUCUGCUGUGG- -5'
10985 3' -50 NC_002794.1 + 127353 0.66 0.9996
Target:  5'- aCGcUCGcggCGGCGGCgcgGccgcucgugucggcGGACGGCACCu -3'
miRNA:   3'- -GCaAGUa--GCUGCUGa--C--------------UCUGCUGUGG- -5'
10985 3' -50 NC_002794.1 + 93847 0.66 0.999535
Target:  5'- --aUCAUgGACGGCcGcGGCGGCgaGCCg -3'
miRNA:   3'- gcaAGUAgCUGCUGaCuCUGCUG--UGG- -5'
10985 3' -50 NC_002794.1 + 125557 0.66 0.999535
Target:  5'- gGUUUcuUCGGCGACgccaaggagGAGAgCGACAgCg -3'
miRNA:   3'- gCAAGu-AGCUGCUGa--------CUCU-GCUGUgG- -5'
10985 3' -50 NC_002794.1 + 88705 0.66 0.999535
Target:  5'- uCGacCGUCGGgguCGAUUGGGGCgGugACCu -3'
miRNA:   3'- -GCaaGUAGCU---GCUGACUCUG-CugUGG- -5'
10985 3' -50 NC_002794.1 + 37747 0.66 0.999535
Target:  5'- ---cCggCGGCGGCgc-GGCGGCGCCg -3'
miRNA:   3'- gcaaGuaGCUGCUGacuCUGCUGUGG- -5'
10985 3' -50 NC_002794.1 + 151855 0.66 0.999504
Target:  5'- gCGUUCAUCGGCGcgcauCUGcagcccguGGAaguggcccucgauuCGGCGCCc -3'
miRNA:   3'- -GCAAGUAGCUGCu----GAC--------UCU--------------GCUGUGG- -5'
10985 3' -50 NC_002794.1 + 121460 0.66 0.999425
Target:  5'- ---cCGUCGGguCGACcgucGAGACGAcCGCCg -3'
miRNA:   3'- gcaaGUAGCU--GCUGa---CUCUGCU-GUGG- -5'
10985 3' -50 NC_002794.1 + 110470 0.66 0.999388
Target:  5'- --cUCGUCGGCucgggggguagagaGGCgGuGGCGGCGCCu -3'
miRNA:   3'- gcaAGUAGCUG--------------CUGaCuCUGCUGUGG- -5'
10985 3' -50 NC_002794.1 + 145781 0.66 0.999294
Target:  5'- gCGgagUCGUcccCGGcCGGCUcgGAcGACGACGCCg -3'
miRNA:   3'- -GCa--AGUA---GCU-GCUGA--CU-CUGCUGUGG- -5'
10985 3' -50 NC_002794.1 + 65898 0.66 0.999294
Target:  5'- uCGUcgCGUCGACGACcuUGAccGuCGuCGCCg -3'
miRNA:   3'- -GCAa-GUAGCUGCUG--ACU--CuGCuGUGG- -5'
10985 3' -50 NC_002794.1 + 17490 0.66 0.999138
Target:  5'- gCGUUUgcgAUCGcCGACgccggccGAGAuCGGCGCCc -3'
miRNA:   3'- -GCAAG---UAGCuGCUGa------CUCU-GCUGUGG- -5'
10985 3' -50 NC_002794.1 + 140182 0.66 0.999138
Target:  5'- uCGggUCggCGACGGCgucgucgaGGGGCGAC-CCg -3'
miRNA:   3'- -GCa-AGuaGCUGCUGa-------CUCUGCUGuGG- -5'
10985 3' -50 NC_002794.1 + 14555 0.66 0.999138
Target:  5'- ---cCGUCGACGcGCggGAGGCGA-GCCg -3'
miRNA:   3'- gcaaGUAGCUGC-UGa-CUCUGCUgUGG- -5'
10985 3' -50 NC_002794.1 + 86954 0.66 0.999138
Target:  5'- gCGagCGUCGACGuccGCUGcGGCGAgCugCg -3'
miRNA:   3'- -GCaaGUAGCUGC---UGACuCUGCU-GugG- -5'
10985 3' -50 NC_002794.1 + 20383 0.66 0.999138
Target:  5'- --aUCGUCGACGcGgUGcGGCGGgACCg -3'
miRNA:   3'- gcaAGUAGCUGC-UgACuCUGCUgUGG- -5'
10985 3' -50 NC_002794.1 + 129180 0.66 0.999121
Target:  5'- cCGUUCgaucggccuccggGUCGACGACcGAGcggcCGACGgCg -3'
miRNA:   3'- -GCAAG-------------UAGCUGCUGaCUCu---GCUGUgG- -5'
10985 3' -50 NC_002794.1 + 129091 0.67 0.998953
Target:  5'- cCGUcCGguggGugGACUGGcGACGAgACCa -3'
miRNA:   3'- -GCAaGUag--CugCUGACU-CUGCUgUGG- -5'
10985 3' -50 NC_002794.1 + 176306 0.67 0.998953
Target:  5'- aGUUCG-CGuACGaACUaGAGACGACAg- -3'
miRNA:   3'- gCAAGUaGC-UGC-UGA-CUCUGCUGUgg -5'
10985 3' -50 NC_002794.1 + 63456 0.67 0.998953
Target:  5'- gCGgcggCGaCGAUGACgacGAGGCGGCgGCCg -3'
miRNA:   3'- -GCaa--GUaGCUGCUGa--CUCUGCUG-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.