miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10986 3' -55.7 NC_002794.1 + 161578 0.66 0.956703
Target:  5'- gGAGCcgucgGUCUcGUCUGAUUCGACUgCGGGu -3'
miRNA:   3'- -CUCG-----CAGAuCAGGCUGAGCUGG-GUCU- -5'
10986 3' -55.7 NC_002794.1 + 49698 0.66 0.956703
Target:  5'- -cGCGUCggcacgaCGACUCGcCCCGGGc -3'
miRNA:   3'- cuCGCAGaucag--GCUGAGCuGGGUCU- -5'
10986 3' -55.7 NC_002794.1 + 62700 0.66 0.952881
Target:  5'- -uGUGUCggcGGccgCCGACgCGACCCAGc -3'
miRNA:   3'- cuCGCAGa--UCa--GGCUGaGCUGGGUCu -5'
10986 3' -55.7 NC_002794.1 + 147626 0.66 0.952881
Target:  5'- aGGCGUCggagagGGUCCGcuaucuccGCUCGAugcgcgauuUCCGGAg -3'
miRNA:   3'- cUCGCAGa-----UCAGGC--------UGAGCU---------GGGUCU- -5'
10986 3' -55.7 NC_002794.1 + 133378 0.66 0.944572
Target:  5'- cGGuCGUC--GUCCGGCggucaugaUCGGCCCGGGg -3'
miRNA:   3'- cUC-GCAGauCAGGCUG--------AGCUGGGUCU- -5'
10986 3' -55.7 NC_002794.1 + 116908 0.66 0.944572
Target:  5'- cGGCGgCcGGUCCGGCgUCGGCuCCGGc -3'
miRNA:   3'- cUCGCaGaUCAGGCUG-AGCUG-GGUCu -5'
10986 3' -55.7 NC_002794.1 + 126443 0.67 0.925226
Target:  5'- uGGGCGcCUcggcccugGGUCCGGCUCGucgggaccuugGCCUGGGg -3'
miRNA:   3'- -CUCGCaGA--------UCAGGCUGAGC-----------UGGGUCU- -5'
10986 3' -55.7 NC_002794.1 + 138723 0.67 0.924695
Target:  5'- -cGCGUCgAG-CCGGCUCGAcggggucCCCGGc -3'
miRNA:   3'- cuCGCAGaUCaGGCUGAGCU-------GGGUCu -5'
10986 3' -55.7 NC_002794.1 + 123661 0.67 0.914173
Target:  5'- -cGCGcagCUGGUgUcGCUCGGCCCGGGc -3'
miRNA:   3'- cuCGCa--GAUCAgGcUGAGCUGGGUCU- -5'
10986 3' -55.7 NC_002794.1 + 36899 0.67 0.914173
Target:  5'- aGAGCGUCcagaGGUCgCGGCgccggccccgCGACCgCGGAg -3'
miRNA:   3'- -CUCGCAGa---UCAG-GCUGa---------GCUGG-GUCU- -5'
10986 3' -55.7 NC_002794.1 + 147793 0.67 0.914173
Target:  5'- uGGGCGUCUcGgagCUGACgcugaagCGGCuCCAGAg -3'
miRNA:   3'- -CUCGCAGAuCa--GGCUGa------GCUG-GGUCU- -5'
10986 3' -55.7 NC_002794.1 + 187019 0.68 0.895884
Target:  5'- cGGCGUCagcgGGUgccgauacaCCGGCUCGcaguCCCGGAg -3'
miRNA:   3'- cUCGCAGa---UCA---------GGCUGAGCu---GGGUCU- -5'
10986 3' -55.7 NC_002794.1 + 53222 0.68 0.88934
Target:  5'- cGAGCGgCgaaacGGUCCGucCUCGGCCCGc- -3'
miRNA:   3'- -CUCGCaGa----UCAGGCu-GAGCUGGGUcu -5'
10986 3' -55.7 NC_002794.1 + 166903 0.68 0.882578
Target:  5'- gGAGCGUUUguacgaggugugAGUCCGugUCGACUg--- -3'
miRNA:   3'- -CUCGCAGA------------UCAGGCugAGCUGGgucu -5'
10986 3' -55.7 NC_002794.1 + 136613 0.68 0.88189
Target:  5'- aGAGCGUgUgcaggugGGUCUGGCagCGGCUCAGGg -3'
miRNA:   3'- -CUCGCAgA-------UCAGGCUGa-GCUGGGUCU- -5'
10986 3' -55.7 NC_002794.1 + 62189 0.68 0.875602
Target:  5'- aAGCucaUCcccGUCCGGCUCGACCgGGAc -3'
miRNA:   3'- cUCGc--AGau-CAGGCUGAGCUGGgUCU- -5'
10986 3' -55.7 NC_002794.1 + 43832 0.69 0.861026
Target:  5'- cGAGUGgcacacCUccucacAGUCCcGCUCGGCCCGGGg -3'
miRNA:   3'- -CUCGCa-----GA------UCAGGcUGAGCUGGGUCU- -5'
10986 3' -55.7 NC_002794.1 + 163304 0.69 0.829534
Target:  5'- cGGUGUUgaauGUuaCCGACUCGACaCCGGAu -3'
miRNA:   3'- cUCGCAGau--CA--GGCUGAGCUG-GGUCU- -5'
10986 3' -55.7 NC_002794.1 + 128990 0.69 0.829534
Target:  5'- cGAGCGcUCUAGcUCGGCggUCGACCCGc- -3'
miRNA:   3'- -CUCGC-AGAUCaGGCUG--AGCUGGGUcu -5'
10986 3' -55.7 NC_002794.1 + 178790 0.7 0.821211
Target:  5'- aGGGCGggaAGg-CGGCUCGGCCCGGGg -3'
miRNA:   3'- -CUCGCagaUCagGCUGAGCUGGGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.