miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10986 5' -63.4 NC_002794.1 + 193742 0.66 0.656576
Target:  5'- -gCCCGcGGCuUCGGCGAGcgACC-GCCGg -3'
miRNA:   3'- agGGGC-CCG-GGUCGCUCa-UGGaCGGU- -5'
10986 5' -63.4 NC_002794.1 + 71077 0.66 0.656576
Target:  5'- gCCgCCGGGUCCAGaCGAacaGCCggucGCCGg -3'
miRNA:   3'- aGG-GGCCCGGGUC-GCUca-UGGa---CGGU- -5'
10986 5' -63.4 NC_002794.1 + 763 0.66 0.655615
Target:  5'- uUUgCCGGGCCC-GCGgugcauuuggcacGGUGCCaaccgUGCCGu -3'
miRNA:   3'- -AGgGGCCCGGGuCGC-------------UCAUGG-----ACGGU- -5'
10986 5' -63.4 NC_002794.1 + 147956 0.66 0.646958
Target:  5'- cUCUCCGGGCUccgagcgcgugCAGCGuGUGgcggugucCCUGCUg -3'
miRNA:   3'- -AGGGGCCCGG-----------GUCGCuCAU--------GGACGGu -5'
10986 5' -63.4 NC_002794.1 + 137964 0.66 0.646958
Target:  5'- uUCgCCGaGGCCCuGgGAGUugUcGCCGc -3'
miRNA:   3'- -AGgGGC-CCGGGuCgCUCAugGaCGGU- -5'
10986 5' -63.4 NC_002794.1 + 176970 0.66 0.646958
Target:  5'- cCUCCGGGuauCCCGG-GAGUACCaGCgGg -3'
miRNA:   3'- aGGGGCCC---GGGUCgCUCAUGGaCGgU- -5'
10986 5' -63.4 NC_002794.1 + 115823 0.66 0.646958
Target:  5'- uUCCgCCuggaucggcgGGGCCCGGCGGGcucggGCCUGg-- -3'
miRNA:   3'- -AGG-GG----------CCCGGGUCGCUCa----UGGACggu -5'
10986 5' -63.4 NC_002794.1 + 96187 0.66 0.646958
Target:  5'- --aCCGGcGCCUgccGGcCGAGUcCCUGCCGg -3'
miRNA:   3'- aggGGCC-CGGG---UC-GCUCAuGGACGGU- -5'
10986 5' -63.4 NC_002794.1 + 80369 0.66 0.644071
Target:  5'- -gUCCGGGCCCAgggccucacccgccGCGAcUACCUacucGCCGc -3'
miRNA:   3'- agGGGCCCGGGU--------------CGCUcAUGGA----CGGU- -5'
10986 5' -63.4 NC_002794.1 + 16537 0.66 0.63733
Target:  5'- gUCCCCGGcgucCCCGGCGuc-GCCaccGCCAc -3'
miRNA:   3'- -AGGGGCCc---GGGUCGCucaUGGa--CGGU- -5'
10986 5' -63.4 NC_002794.1 + 84847 0.66 0.63733
Target:  5'- aCCCCGGGCUguGUGGcucACC-GCCu -3'
miRNA:   3'- aGGGGCCCGGguCGCUca-UGGaCGGu -5'
10986 5' -63.4 NC_002794.1 + 93085 0.66 0.63733
Target:  5'- gUUCCCGGGCUgCGGCcucu-CCUGCCu -3'
miRNA:   3'- -AGGGGCCCGG-GUCGcucauGGACGGu -5'
10986 5' -63.4 NC_002794.1 + 99808 0.66 0.627698
Target:  5'- gCCgCGGGCgCCGGCGccgucGGccgACCUGCUc -3'
miRNA:   3'- aGGgGCCCG-GGUCGC-----UCa--UGGACGGu -5'
10986 5' -63.4 NC_002794.1 + 839 0.66 0.618069
Target:  5'- gUCCCCGGcgcgugcguucgGCCCAGCGcGcGCCcGCgAg -3'
miRNA:   3'- -AGGGGCC------------CGGGUCGCuCaUGGaCGgU- -5'
10986 5' -63.4 NC_002794.1 + 121791 0.66 0.618069
Target:  5'- cCCCCGGccaccGCgaCCGGCcGGcGCCUGCCGc -3'
miRNA:   3'- aGGGGCC-----CG--GGUCGcUCaUGGACGGU- -5'
10986 5' -63.4 NC_002794.1 + 1335 0.66 0.60845
Target:  5'- cUCCCCGGGUCCGaaGAGacGCCUGa-- -3'
miRNA:   3'- -AGGGGCCCGGGUcgCUCa-UGGACggu -5'
10986 5' -63.4 NC_002794.1 + 66527 0.67 0.598846
Target:  5'- gUCCCCGGGUCC-GCGAagGUcggcGCCgGCgGa -3'
miRNA:   3'- -AGGGGCCCGGGuCGCU--CA----UGGaCGgU- -5'
10986 5' -63.4 NC_002794.1 + 101246 0.67 0.598846
Target:  5'- gCUCCGGcGCgCAGCGGGggGCC-GCCc -3'
miRNA:   3'- aGGGGCC-CGgGUCGCUCa-UGGaCGGu -5'
10986 5' -63.4 NC_002794.1 + 99286 0.67 0.579709
Target:  5'- cUCCCGGGCUCuuccGCGAccGCC-GCCAc -3'
miRNA:   3'- aGGGGCCCGGGu---CGCUcaUGGaCGGU- -5'
10986 5' -63.4 NC_002794.1 + 137262 0.67 0.579709
Target:  5'- cUCCCGGGCCCccucaGGCGAGUcguucGCUcaaguacguggUGCUg -3'
miRNA:   3'- aGGGGCCCGGG-----UCGCUCA-----UGG-----------ACGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.