miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10988 3' -61.5 NC_002794.1 + 147695 0.66 0.756318
Target:  5'- ----cGGCGGcGaUGCGGCGCaCGugCGCc -3'
miRNA:   3'- cacuaCUGCC-C-GCGCCGCG-GCugGUG- -5'
10988 3' -61.5 NC_002794.1 + 20546 0.66 0.756318
Target:  5'- -cGAcGACGGGCGacCGGauccCGCCGucgcuCCGCa -3'
miRNA:   3'- caCUaCUGCCCGC--GCC----GCGGCu----GGUG- -5'
10988 3' -61.5 NC_002794.1 + 80836 0.66 0.756318
Target:  5'- -cGA-GGC-GGCGCGGaCGCCn-CCACc -3'
miRNA:   3'- caCUaCUGcCCGCGCC-GCGGcuGGUG- -5'
10988 3' -61.5 NC_002794.1 + 148191 0.66 0.747181
Target:  5'- -gGA-GGgGGGUcucCGGCGCCGGCgCGCg -3'
miRNA:   3'- caCUaCUgCCCGc--GCCGCGGCUG-GUG- -5'
10988 3' -61.5 NC_002794.1 + 150599 0.66 0.747181
Target:  5'- -cGAgGACGGcCG-GGCGCCGGCUcuGCg -3'
miRNA:   3'- caCUaCUGCCcGCgCCGCGGCUGG--UG- -5'
10988 3' -61.5 NC_002794.1 + 93016 0.66 0.747181
Target:  5'- cGUGGUGcaGCGGcggaacccgguGCGCGGCuGCCuGGCCu- -3'
miRNA:   3'- -CACUAC--UGCC-----------CGCGCCG-CGG-CUGGug -5'
10988 3' -61.5 NC_002794.1 + 12414 0.66 0.747181
Target:  5'- -cGcgGAC-GGCGC-GCGCCGACUg- -3'
miRNA:   3'- caCuaCUGcCCGCGcCGCGGCUGGug -5'
10988 3' -61.5 NC_002794.1 + 141582 0.66 0.747181
Target:  5'- cGUGAucaUGAcgcccgcgucgcCGGGCGgcuCGGCGaCCGGCuCGCg -3'
miRNA:   3'- -CACU---ACU------------GCCCGC---GCCGC-GGCUG-GUG- -5'
10988 3' -61.5 NC_002794.1 + 54860 0.66 0.747181
Target:  5'- ----aGGCcGGCGCGG-GCCG-CCGCa -3'
miRNA:   3'- cacuaCUGcCCGCGCCgCGGCuGGUG- -5'
10988 3' -61.5 NC_002794.1 + 138682 0.66 0.741655
Target:  5'- cGUGgcGGCGGGuCgugaugcaaaugaggGCGGCGUgGACuCGCg -3'
miRNA:   3'- -CACuaCUGCCC-G---------------CGCCGCGgCUG-GUG- -5'
10988 3' -61.5 NC_002794.1 + 100824 0.66 0.737954
Target:  5'- -gGgcGGCGGGgGcCGGCaGCCGGgcuuCCGCa -3'
miRNA:   3'- caCuaCUGCCCgC-GCCG-CGGCU----GGUG- -5'
10988 3' -61.5 NC_002794.1 + 56460 0.66 0.737954
Target:  5'- ----aGACGGGCGCGcugcGCGCCuucgaaacgaGGCCGg -3'
miRNA:   3'- cacuaCUGCCCGCGC----CGCGG----------CUGGUg -5'
10988 3' -61.5 NC_002794.1 + 190755 0.66 0.737954
Target:  5'- ----cGACGGGgGCGGCG---GCCGCg -3'
miRNA:   3'- cacuaCUGCCCgCGCCGCggcUGGUG- -5'
10988 3' -61.5 NC_002794.1 + 14447 0.66 0.737954
Target:  5'- -cGAUGcuccGCGGGCgaccgugucgaGCGGCGC--GCCGCg -3'
miRNA:   3'- caCUAC----UGCCCG-----------CGCCGCGgcUGGUG- -5'
10988 3' -61.5 NC_002794.1 + 124393 0.66 0.737026
Target:  5'- ----cGGCGGcGCGUcgccggucgucggGGCGCCGuCCGCc -3'
miRNA:   3'- cacuaCUGCC-CGCG-------------CCGCGGCuGGUG- -5'
10988 3' -61.5 NC_002794.1 + 101596 0.66 0.728643
Target:  5'- ----gGGgGGGCG-GGUGCCGGCC-Cg -3'
miRNA:   3'- cacuaCUgCCCGCgCCGCGGCUGGuG- -5'
10988 3' -61.5 NC_002794.1 + 91868 0.66 0.728643
Target:  5'- -gGGUccCGGGggugGCGGCGgCGGCCGCg -3'
miRNA:   3'- caCUAcuGCCCg---CGCCGCgGCUGGUG- -5'
10988 3' -61.5 NC_002794.1 + 49411 0.66 0.728643
Target:  5'- ----cGGCGGcCGCGGCGgCGGCgGCc -3'
miRNA:   3'- cacuaCUGCCcGCGCCGCgGCUGgUG- -5'
10988 3' -61.5 NC_002794.1 + 114138 0.66 0.728643
Target:  5'- -cGccGGCcaGGGCGCgcaGGCGCCGcgucaGCCGCu -3'
miRNA:   3'- caCuaCUG--CCCGCG---CCGCGGC-----UGGUG- -5'
10988 3' -61.5 NC_002794.1 + 111106 0.66 0.728643
Target:  5'- ----cGGCGGGaccguggccguCGaCGGCGCCGGCgGCc -3'
miRNA:   3'- cacuaCUGCCC-----------GC-GCCGCGGCUGgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.