Results 1 - 20 of 155 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10988 | 3' | -61.5 | NC_002794.1 | + | 111106 | 0.66 | 0.728643 |
Target: 5'- ----cGGCGGGaccguggccguCGaCGGCGCCGGCgGCc -3' miRNA: 3'- cacuaCUGCCC-----------GC-GCCGCGGCUGgUG- -5' |
|||||||
10988 | 3' | -61.5 | NC_002794.1 | + | 190755 | 0.66 | 0.737954 |
Target: 5'- ----cGACGGGgGCGGCG---GCCGCg -3' miRNA: 3'- cacuaCUGCCCgCGCCGCggcUGGUG- -5' |
|||||||
10988 | 3' | -61.5 | NC_002794.1 | + | 14447 | 0.66 | 0.737954 |
Target: 5'- -cGAUGcuccGCGGGCgaccgugucgaGCGGCGC--GCCGCg -3' miRNA: 3'- caCUAC----UGCCCG-----------CGCCGCGgcUGGUG- -5' |
|||||||
10988 | 3' | -61.5 | NC_002794.1 | + | 124393 | 0.66 | 0.737026 |
Target: 5'- ----cGGCGGcGCGUcgccggucgucggGGCGCCGuCCGCc -3' miRNA: 3'- cacuaCUGCC-CGCG-------------CCGCGGCuGGUG- -5' |
|||||||
10988 | 3' | -61.5 | NC_002794.1 | + | 179692 | 0.66 | 0.728643 |
Target: 5'- -cGGUGGCGgcGGCGaCGGUggcgacGCCGGCgGCu -3' miRNA: 3'- caCUACUGC--CCGC-GCCG------CGGCUGgUG- -5' |
|||||||
10988 | 3' | -61.5 | NC_002794.1 | + | 114138 | 0.66 | 0.728643 |
Target: 5'- -cGccGGCcaGGGCGCgcaGGCGCCGcgucaGCCGCu -3' miRNA: 3'- caCuaCUG--CCCGCG---CCGCGGC-----UGGUG- -5' |
|||||||
10988 | 3' | -61.5 | NC_002794.1 | + | 49411 | 0.66 | 0.728643 |
Target: 5'- ----cGGCGGcCGCGGCGgCGGCgGCc -3' miRNA: 3'- cacuaCUGCCcGCGCCGCgGCUGgUG- -5' |
|||||||
10988 | 3' | -61.5 | NC_002794.1 | + | 91868 | 0.66 | 0.728643 |
Target: 5'- -gGGUccCGGGggugGCGGCGgCGGCCGCg -3' miRNA: 3'- caCUAcuGCCCg---CGCCGCgGCUGGUG- -5' |
|||||||
10988 | 3' | -61.5 | NC_002794.1 | + | 101596 | 0.66 | 0.728643 |
Target: 5'- ----gGGgGGGCG-GGUGCCGGCC-Cg -3' miRNA: 3'- cacuaCUgCCCGCgCCGCGGCUGGuG- -5' |
|||||||
10988 | 3' | -61.5 | NC_002794.1 | + | 56460 | 0.66 | 0.737954 |
Target: 5'- ----aGACGGGCGCGcugcGCGCCuucgaaacgaGGCCGg -3' miRNA: 3'- cacuaCUGCCCGCGC----CGCGG----------CUGGUg -5' |
|||||||
10988 | 3' | -61.5 | NC_002794.1 | + | 138682 | 0.66 | 0.741655 |
Target: 5'- cGUGgcGGCGGGuCgugaugcaaaugaggGCGGCGUgGACuCGCg -3' miRNA: 3'- -CACuaCUGCCC-G---------------CGCCGCGgCUG-GUG- -5' |
|||||||
10988 | 3' | -61.5 | NC_002794.1 | + | 54860 | 0.66 | 0.747181 |
Target: 5'- ----aGGCcGGCGCGG-GCCG-CCGCa -3' miRNA: 3'- cacuaCUGcCCGCGCCgCGGCuGGUG- -5' |
|||||||
10988 | 3' | -61.5 | NC_002794.1 | + | 141582 | 0.66 | 0.747181 |
Target: 5'- cGUGAucaUGAcgcccgcgucgcCGGGCGgcuCGGCGaCCGGCuCGCg -3' miRNA: 3'- -CACU---ACU------------GCCCGC---GCCGC-GGCUG-GUG- -5' |
|||||||
10988 | 3' | -61.5 | NC_002794.1 | + | 20546 | 0.66 | 0.756318 |
Target: 5'- -cGAcGACGGGCGacCGGauccCGCCGucgcuCCGCa -3' miRNA: 3'- caCUaCUGCCCGC--GCC----GCGGCu----GGUG- -5' |
|||||||
10988 | 3' | -61.5 | NC_002794.1 | + | 80836 | 0.66 | 0.756318 |
Target: 5'- -cGA-GGC-GGCGCGGaCGCCn-CCACc -3' miRNA: 3'- caCUaCUGcCCGCGCC-GCGGcuGGUG- -5' |
|||||||
10988 | 3' | -61.5 | NC_002794.1 | + | 12414 | 0.66 | 0.747181 |
Target: 5'- -cGcgGAC-GGCGC-GCGCCGACUg- -3' miRNA: 3'- caCuaCUGcCCGCGcCGCGGCUGGug -5' |
|||||||
10988 | 3' | -61.5 | NC_002794.1 | + | 93016 | 0.66 | 0.747181 |
Target: 5'- cGUGGUGcaGCGGcggaacccgguGCGCGGCuGCCuGGCCu- -3' miRNA: 3'- -CACUAC--UGCC-----------CGCGCCG-CGG-CUGGug -5' |
|||||||
10988 | 3' | -61.5 | NC_002794.1 | + | 150599 | 0.66 | 0.747181 |
Target: 5'- -cGAgGACGGcCG-GGCGCCGGCUcuGCg -3' miRNA: 3'- caCUaCUGCCcGCgCCGCGGCUGG--UG- -5' |
|||||||
10988 | 3' | -61.5 | NC_002794.1 | + | 148191 | 0.66 | 0.747181 |
Target: 5'- -gGA-GGgGGGUcucCGGCGCCGGCgCGCg -3' miRNA: 3'- caCUaCUgCCCGc--GCCGCGGCUG-GUG- -5' |
|||||||
10988 | 3' | -61.5 | NC_002794.1 | + | 100824 | 0.66 | 0.737954 |
Target: 5'- -gGgcGGCGGGgGcCGGCaGCCGGgcuuCCGCa -3' miRNA: 3'- caCuaCUGCCCgC-GCCG-CGGCU----GGUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home