miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10988 3' -61.5 NC_002794.1 + 107058 0.82 0.091006
Target:  5'- -aGgcGGCGGGCGCGGCGCCG-CCGg -3'
miRNA:   3'- caCuaCUGCCCGCGCCGCGGCuGGUg -5'
10988 3' -61.5 NC_002794.1 + 60622 0.81 0.105517
Target:  5'- -aGAaccgGACGGGCggacccggcgccgGCGGCGCCGGCCACc -3'
miRNA:   3'- caCUa---CUGCCCG-------------CGCCGCGGCUGGUG- -5'
10988 3' -61.5 NC_002794.1 + 151043 0.8 0.135502
Target:  5'- cUGAUGACGGGCGa-GUGCaCGGCCGCg -3'
miRNA:   3'- cACUACUGCCCGCgcCGCG-GCUGGUG- -5'
10988 3' -61.5 NC_002794.1 + 107528 0.79 0.138865
Target:  5'- -cGAcGGCcGGCGCGGCGCCGGCgGCg -3'
miRNA:   3'- caCUaCUGcCCGCGCCGCGGCUGgUG- -5'
10988 3' -61.5 NC_002794.1 + 148126 0.77 0.19459
Target:  5'- -cGGUGuCGGGCGCGGgGCCG-CCGg -3'
miRNA:   3'- caCUACuGCCCGCGCCgCGGCuGGUg -5'
10988 3' -61.5 NC_002794.1 + 99585 0.77 0.208837
Target:  5'- gGUGcgGA-GGGCGCGGCGgCGGCgCGCg -3'
miRNA:   3'- -CACuaCUgCCCGCGCCGCgGCUG-GUG- -5'
10988 3' -61.5 NC_002794.1 + 71804 0.76 0.213783
Target:  5'- ----cGGCGGGCGCGGCGa-GGCCGCc -3'
miRNA:   3'- cacuaCUGCCCGCGCCGCggCUGGUG- -5'
10988 3' -61.5 NC_002794.1 + 115976 0.76 0.240036
Target:  5'- -gGAgcggGACGGGgaGCGGCGCCgcggaGACCGCg -3'
miRNA:   3'- caCUa---CUGCCCg-CGCCGCGG-----CUGGUG- -5'
10988 3' -61.5 NC_002794.1 + 12214 0.75 0.245599
Target:  5'- cGUGccGGCGGcGUcgGCGGCGCCGGCgGCg -3'
miRNA:   3'- -CACuaCUGCC-CG--CGCCGCGGCUGgUG- -5'
10988 3' -61.5 NC_002794.1 + 63697 0.75 0.257046
Target:  5'- -cGAUGACGacgacGGCGcCGGCGCCgccgGACCGCc -3'
miRNA:   3'- caCUACUGC-----CCGC-GCCGCGG----CUGGUG- -5'
10988 3' -61.5 NC_002794.1 + 101031 0.75 0.268926
Target:  5'- -cGcgGGcCGGGCGCGG-GUCGGCCGCu -3'
miRNA:   3'- caCuaCU-GCCCGCGCCgCGGCUGGUG- -5'
10988 3' -61.5 NC_002794.1 + 11646 0.75 0.27503
Target:  5'- ----cGACGGGCggccgacgacGCGGCccGCCGGCCACa -3'
miRNA:   3'- cacuaCUGCCCG----------CGCCG--CGGCUGGUG- -5'
10988 3' -61.5 NC_002794.1 + 111318 0.74 0.307217
Target:  5'- -aGAcGcCGGGCcaGCGGCGCgGGCCGCa -3'
miRNA:   3'- caCUaCuGCCCG--CGCCGCGgCUGGUG- -5'
10988 3' -61.5 NC_002794.1 + 32866 0.74 0.307217
Target:  5'- -cGAgccGGCGGGCgGCGGCGgCGGCgGCg -3'
miRNA:   3'- caCUa--CUGCCCG-CGCCGCgGCUGgUG- -5'
10988 3' -61.5 NC_002794.1 + 49268 0.73 0.320876
Target:  5'- ----cGACGGGCGCuccaacggcccgGGCGCCG-CCGCc -3'
miRNA:   3'- cacuaCUGCCCGCG------------CCGCGGCuGGUG- -5'
10988 3' -61.5 NC_002794.1 + 52886 0.73 0.327874
Target:  5'- -cGAUgGugGGGUcgaacGCGGCGCCG-CCGCc -3'
miRNA:   3'- caCUA-CugCCCG-----CGCCGCGGCuGGUG- -5'
10988 3' -61.5 NC_002794.1 + 50663 0.73 0.334984
Target:  5'- --cAUGGCGGcCGCGGCGCUcGCCGCg -3'
miRNA:   3'- cacUACUGCCcGCGCCGCGGcUGGUG- -5'
10988 3' -61.5 NC_002794.1 + 146873 0.73 0.342207
Target:  5'- -gGGUGGgGGGCGCGGUcgGCCGAUgAUu -3'
miRNA:   3'- caCUACUgCCCGCGCCG--CGGCUGgUG- -5'
10988 3' -61.5 NC_002794.1 + 141794 0.73 0.356986
Target:  5'- ----cGACGGGCGCGG-GUCGGCCuCg -3'
miRNA:   3'- cacuaCUGCCCGCGCCgCGGCUGGuG- -5'
10988 3' -61.5 NC_002794.1 + 121584 0.73 0.364542
Target:  5'- --cGUGACGGGCGCGGgGUCGuuCgGCg -3'
miRNA:   3'- cacUACUGCCCGCGCCgCGGCu-GgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.