miRNA display CGI


Results 21 - 40 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10988 3' -61.5 NC_002794.1 + 120139 0.72 0.372208
Target:  5'- -cGggGACGGGC-CGGUGCCgGACgACg -3'
miRNA:   3'- caCuaCUGCCCGcGCCGCGG-CUGgUG- -5'
10988 3' -61.5 NC_002794.1 + 62494 0.72 0.372208
Target:  5'- -cGAgugGACGGcGgGCGGCGCCG-CCGg -3'
miRNA:   3'- caCUa--CUGCC-CgCGCCGCGGCuGGUg -5'
10988 3' -61.5 NC_002794.1 + 58078 0.72 0.387073
Target:  5'- -cGG-GACGGGCGgccCGGCGCCcgcgcucGACCGCu -3'
miRNA:   3'- caCUaCUGCCCGC---GCCGCGG-------CUGGUG- -5'
10988 3' -61.5 NC_002794.1 + 56909 0.72 0.395855
Target:  5'- cGUGGccACGGGCGCcgGGCuGCCGGCCucGCa -3'
miRNA:   3'- -CACUacUGCCCGCG--CCG-CGGCUGG--UG- -5'
10988 3' -61.5 NC_002794.1 + 119513 0.72 0.40395
Target:  5'- ----cGGC-GGCGCGGaGCCGGCCGCg -3'
miRNA:   3'- cacuaCUGcCCGCGCCgCGGCUGGUG- -5'
10988 3' -61.5 NC_002794.1 + 76788 0.72 0.412149
Target:  5'- -cGAgccgGGCGGGCGa-GCGgCGACCACc -3'
miRNA:   3'- caCUa---CUGCCCGCgcCGCgGCUGGUG- -5'
10988 3' -61.5 NC_002794.1 + 48154 0.72 0.412149
Target:  5'- ----cGACGaGGCaGCGGCGCCGcuucacGCCGCu -3'
miRNA:   3'- cacuaCUGC-CCG-CGCCGCGGC------UGGUG- -5'
10988 3' -61.5 NC_002794.1 + 192001 0.71 0.42045
Target:  5'- -cGG-GACGGuaGCGGCGgUGGCCGCg -3'
miRNA:   3'- caCUaCUGCCcgCGCCGCgGCUGGUG- -5'
10988 3' -61.5 NC_002794.1 + 37748 0.71 0.43735
Target:  5'- -cGgcGGCGGcGCgGCGGCGCCGGCgGg -3'
miRNA:   3'- caCuaCUGCC-CG-CGCCGCGGCUGgUg -5'
10988 3' -61.5 NC_002794.1 + 143254 0.71 0.43735
Target:  5'- cGUGGUGcaggaggaagGCccGGCcCGGCGCCGGCCGCu -3'
miRNA:   3'- -CACUAC----------UGc-CCGcGCCGCGGCUGGUG- -5'
10988 3' -61.5 NC_002794.1 + 34857 0.71 0.43735
Target:  5'- -gGA--GCGGGCGCcgcgGGCGCCGcggacGCCGCg -3'
miRNA:   3'- caCUacUGCCCGCG----CCGCGGC-----UGGUG- -5'
10988 3' -61.5 NC_002794.1 + 185396 0.71 0.445946
Target:  5'- -aGAaGACgaGGGCGCgGGC-CCGACCGCc -3'
miRNA:   3'- caCUaCUG--CCCGCG-CCGcGGCUGGUG- -5'
10988 3' -61.5 NC_002794.1 + 70223 0.71 0.445946
Target:  5'- -gGAcGGuCGGGCG-GGCgGCCGGCCGCc -3'
miRNA:   3'- caCUaCU-GCCCGCgCCG-CGGCUGGUG- -5'
10988 3' -61.5 NC_002794.1 + 37883 0.71 0.445946
Target:  5'- -gGgcGGCGGGgGCGGUGgCGGCgGCa -3'
miRNA:   3'- caCuaCUGCCCgCGCCGCgGCUGgUG- -5'
10988 3' -61.5 NC_002794.1 + 21928 0.71 0.452018
Target:  5'- -cGAcGGCGgcGGCGCGGCGCucgucgaaggccguCGGCCGCu -3'
miRNA:   3'- caCUaCUGC--CCGCGCCGCG--------------GCUGGUG- -5'
10988 3' -61.5 NC_002794.1 + 118261 0.71 0.463414
Target:  5'- -aGGUcGGCcgGGGCgGCGGCGCCGGCguCg -3'
miRNA:   3'- caCUA-CUG--CCCG-CGCCGCGGCUGguG- -5'
10988 3' -61.5 NC_002794.1 + 68942 0.7 0.472281
Target:  5'- -----cGCGGGcCGCGGCGCCGGCg-- -3'
miRNA:   3'- cacuacUGCCC-GCGCCGCGGCUGgug -5'
10988 3' -61.5 NC_002794.1 + 106355 0.7 0.472281
Target:  5'- -cGAcGGCGGGCG-GGCGCCGGuuCgCGCg -3'
miRNA:   3'- caCUaCUGCCCGCgCCGCGGCU--G-GUG- -5'
10988 3' -61.5 NC_002794.1 + 112325 0.7 0.475852
Target:  5'- -cGAcGGCGGGgagcgcgccggccgGCGGCGCCGGCgGCg -3'
miRNA:   3'- caCUaCUGCCCg-------------CGCCGCGGCUGgUG- -5'
10988 3' -61.5 NC_002794.1 + 142394 0.7 0.481234
Target:  5'- -aGAcGGCGGuGCagGCGGCGUCGGCgGCg -3'
miRNA:   3'- caCUaCUGCC-CG--CGCCGCGGCUGgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.