miRNA display CGI


Results 21 - 40 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10988 3' -61.5 NC_002794.1 + 91868 0.66 0.728643
Target:  5'- -gGGUccCGGGggugGCGGCGgCGGCCGCg -3'
miRNA:   3'- caCUAcuGCCCg---CGCCGCgGCUGGUG- -5'
10988 3' -61.5 NC_002794.1 + 49411 0.66 0.728643
Target:  5'- ----cGGCGGcCGCGGCGgCGGCgGCc -3'
miRNA:   3'- cacuaCUGCCcGCGCCGCgGCUGgUG- -5'
10988 3' -61.5 NC_002794.1 + 114138 0.66 0.728643
Target:  5'- -cGccGGCcaGGGCGCgcaGGCGCCGcgucaGCCGCu -3'
miRNA:   3'- caCuaCUG--CCCGCG---CCGCGGC-----UGGUG- -5'
10988 3' -61.5 NC_002794.1 + 179692 0.66 0.728643
Target:  5'- -cGGUGGCGgcGGCGaCGGUggcgacGCCGGCgGCu -3'
miRNA:   3'- caCUACUGC--CCGC-GCCG------CGGCUGgUG- -5'
10988 3' -61.5 NC_002794.1 + 3359 0.66 0.727707
Target:  5'- -gGGUGGCcgauucuGGGaaaaaGCGGaacgaGCCGGCCGCc -3'
miRNA:   3'- caCUACUG-------CCCg----CGCCg----CGGCUGGUG- -5'
10988 3' -61.5 NC_002794.1 + 127982 0.66 0.719257
Target:  5'- gGUGGUGugGuGGUGUcugGGCGgaCGACCGu -3'
miRNA:   3'- -CACUACugC-CCGCG---CCGCg-GCUGGUg -5'
10988 3' -61.5 NC_002794.1 + 61548 0.66 0.719257
Target:  5'- -aGAcGACGccgcCGCGGCGgCGGCCGCc -3'
miRNA:   3'- caCUaCUGCcc--GCGCCGCgGCUGGUG- -5'
10988 3' -61.5 NC_002794.1 + 95741 0.66 0.719257
Target:  5'- -cGuugGACGGggcugguacucGCGgGGCGgCGGCCGCg -3'
miRNA:   3'- caCua-CUGCC-----------CGCgCCGCgGCUGGUG- -5'
10988 3' -61.5 NC_002794.1 + 91227 0.66 0.719257
Target:  5'- -gGcgGAC-GGCGCGGCGgCCGucggGCUGCg -3'
miRNA:   3'- caCuaCUGcCCGCGCCGC-GGC----UGGUG- -5'
10988 3' -61.5 NC_002794.1 + 111604 0.66 0.719257
Target:  5'- gGUGAUcucccaggccGGCGGGgccgcCGCGGcCGCCGccggucgggcGCCGCg -3'
miRNA:   3'- -CACUA----------CUGCCC-----GCGCC-GCGGC----------UGGUG- -5'
10988 3' -61.5 NC_002794.1 + 184506 0.66 0.719257
Target:  5'- ----gGGCGGcgcgggccccgcGCGCGGCGCgGGCgACg -3'
miRNA:   3'- cacuaCUGCC------------CGCGCCGCGgCUGgUG- -5'
10988 3' -61.5 NC_002794.1 + 19450 0.66 0.709804
Target:  5'- -cGA--GCGGGCacgaGCGGCGgCGGCgGCg -3'
miRNA:   3'- caCUacUGCCCG----CGCCGCgGCUGgUG- -5'
10988 3' -61.5 NC_002794.1 + 38435 0.66 0.709804
Target:  5'- aUGgcGGCGGGCcggacugaggaGcCGGCGC-GGCCGCg -3'
miRNA:   3'- cACuaCUGCCCG-----------C-GCCGCGgCUGGUG- -5'
10988 3' -61.5 NC_002794.1 + 89918 0.66 0.709804
Target:  5'- -cGuUGGCGcuagaGGCGCgGGCGCCGGCUu- -3'
miRNA:   3'- caCuACUGC-----CCGCG-CCGCGGCUGGug -5'
10988 3' -61.5 NC_002794.1 + 136339 0.66 0.709804
Target:  5'- -cGGUGGCGGGCcagcGUGGCGuuGAggcUCAg -3'
miRNA:   3'- caCUACUGCCCG----CGCCGCggCU---GGUg -5'
10988 3' -61.5 NC_002794.1 + 149246 0.66 0.709804
Target:  5'- ----cGcCGGGguCGCGGCGCC-ACCACc -3'
miRNA:   3'- cacuaCuGCCC--GCGCCGCGGcUGGUG- -5'
10988 3' -61.5 NC_002794.1 + 51066 0.66 0.700291
Target:  5'- -cGgcGACGGcgaccuccgaGCGUGGCGCgcucggaaaagaCGACCGCg -3'
miRNA:   3'- caCuaCUGCC----------CGCGCCGCG------------GCUGGUG- -5'
10988 3' -61.5 NC_002794.1 + 14779 0.66 0.700291
Target:  5'- cUGAggccGGCGaGGC-CGGCGUgaccgCGACCACg -3'
miRNA:   3'- cACUa---CUGC-CCGcGCCGCG-----GCUGGUG- -5'
10988 3' -61.5 NC_002794.1 + 19525 0.66 0.700291
Target:  5'- -gGAgcGCcGGCGCGGCGCgGcCCGCc -3'
miRNA:   3'- caCUacUGcCCGCGCCGCGgCuGGUG- -5'
10988 3' -61.5 NC_002794.1 + 126630 0.66 0.700291
Target:  5'- cGUGAgcgcGAcCGGGCGCccggacGCGCCGagagaccgacggGCCGCg -3'
miRNA:   3'- -CACUa---CU-GCCCGCGc-----CGCGGC------------UGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.