miRNA display CGI


Results 41 - 60 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10988 3' -61.5 NC_002794.1 + 43171 0.66 0.700291
Target:  5'- -cGgcGACGGaauagcgguuGCGC-GCGCCGACCGg -3'
miRNA:   3'- caCuaCUGCC----------CGCGcCGCGGCUGGUg -5'
10988 3' -61.5 NC_002794.1 + 145227 0.67 0.690727
Target:  5'- cGUGGUGuCGgaGGCGCGcGCGCUgcggaagcgGAUCGCg -3'
miRNA:   3'- -CACUACuGC--CCGCGC-CGCGG---------CUGGUG- -5'
10988 3' -61.5 NC_002794.1 + 38609 0.67 0.690727
Target:  5'- -aGAggccgGACGGGCGCGuC-CCGACuCGCc -3'
miRNA:   3'- caCUa----CUGCCCGCGCcGcGGCUG-GUG- -5'
10988 3' -61.5 NC_002794.1 + 137644 0.67 0.690727
Target:  5'- ---cUGGCGGGCGCcgggccuccGGCGCCgcuggugcgGACgCACg -3'
miRNA:   3'- cacuACUGCCCGCG---------CCGCGG---------CUG-GUG- -5'
10988 3' -61.5 NC_002794.1 + 66736 0.67 0.681119
Target:  5'- -cGccGGCGguGGCgGCGGCGCguaCGACCGCu -3'
miRNA:   3'- caCuaCUGC--CCG-CGCCGCG---GCUGGUG- -5'
10988 3' -61.5 NC_002794.1 + 108398 0.67 0.681119
Target:  5'- -gGA-GGCuccGGCgGCGGCGCCcACCACg -3'
miRNA:   3'- caCUaCUGc--CCG-CGCCGCGGcUGGUG- -5'
10988 3' -61.5 NC_002794.1 + 100396 0.67 0.681119
Target:  5'- cGUGGacGACGuGGCGUGGCcGCUGuACCGg -3'
miRNA:   3'- -CACUa-CUGC-CCGCGCCG-CGGC-UGGUg -5'
10988 3' -61.5 NC_002794.1 + 94415 0.67 0.681119
Target:  5'- -cGGUGugGGGCGCG-C-CCGACaACc -3'
miRNA:   3'- caCUACugCCCGCGCcGcGGCUGgUG- -5'
10988 3' -61.5 NC_002794.1 + 181763 0.67 0.681119
Target:  5'- -cGcUGACGccgauGGCGCcGCGCCG-CCGCg -3'
miRNA:   3'- caCuACUGC-----CCGCGcCGCGGCuGGUG- -5'
10988 3' -61.5 NC_002794.1 + 193587 0.67 0.678229
Target:  5'- -cGGUGGCGGcucaccgucguguaGCguaccGCGGCGCCGugGCCAUc -3'
miRNA:   3'- caCUACUGCC--------------CG-----CGCCGCGGC--UGGUG- -5'
10988 3' -61.5 NC_002794.1 + 122291 0.67 0.678229
Target:  5'- ----gGACGGGCGCgaggagugcccgcuGGCcgucGCCGugCGCg -3'
miRNA:   3'- cacuaCUGCCCGCG--------------CCG----CGGCugGUG- -5'
10988 3' -61.5 NC_002794.1 + 94463 0.67 0.671474
Target:  5'- -cGGUGGCGacggcaacGGCgGCGGCGgacgCGGCCGCg -3'
miRNA:   3'- caCUACUGC--------CCG-CGCCGCg---GCUGGUG- -5'
10988 3' -61.5 NC_002794.1 + 34759 0.67 0.671474
Target:  5'- -cGcgGugGGaCGCGGCacgGCCGcCCGCg -3'
miRNA:   3'- caCuaCugCCcGCGCCG---CGGCuGGUG- -5'
10988 3' -61.5 NC_002794.1 + 122592 0.67 0.671474
Target:  5'- aUGAagGACGGGC-UGGCGCUGAgCCu- -3'
miRNA:   3'- cACUa-CUGCCCGcGCCGCGGCU-GGug -5'
10988 3' -61.5 NC_002794.1 + 48049 0.67 0.671474
Target:  5'- aGUGcGUGcUGGGCaCGGCGCUGAUgGCc -3'
miRNA:   3'- -CAC-UACuGCCCGcGCCGCGGCUGgUG- -5'
10988 3' -61.5 NC_002794.1 + 137529 0.67 0.665673
Target:  5'- -gGAUGAccgagacggagucuuCGGGCGCGaagaacgucGCGCCGccgucGCCGCc -3'
miRNA:   3'- caCUACU---------------GCCCGCGC---------CGCGGC-----UGGUG- -5'
10988 3' -61.5 NC_002794.1 + 107891 0.67 0.661801
Target:  5'- ----cGGCGGGUGCGGCuGCCGGg--- -3'
miRNA:   3'- cacuaCUGCCCGCGCCG-CGGCUggug -5'
10988 3' -61.5 NC_002794.1 + 123701 0.67 0.661801
Target:  5'- -cGAcUGGCGGGCGUGagcGCGUCGuucuauCCGCu -3'
miRNA:   3'- caCU-ACUGCCCGCGC---CGCGGCu-----GGUG- -5'
10988 3' -61.5 NC_002794.1 + 42584 0.67 0.661801
Target:  5'- -cGcgGACggaggaGGGCGCGGCGgCCGGgaGCg -3'
miRNA:   3'- caCuaCUG------CCCGCGCCGC-GGCUggUG- -5'
10988 3' -61.5 NC_002794.1 + 89709 0.67 0.661801
Target:  5'- -----aACGGcGcCGCGGUGCCGAuCCGCg -3'
miRNA:   3'- cacuacUGCC-C-GCGCCGCGGCU-GGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.