miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10988 3' -61.5 NC_002794.1 + 3359 0.66 0.727707
Target:  5'- -gGGUGGCcgauucuGGGaaaaaGCGGaacgaGCCGGCCGCc -3'
miRNA:   3'- caCUACUG-------CCCg----CGCCg----CGGCUGGUG- -5'
10988 3' -61.5 NC_002794.1 + 9331 0.68 0.584222
Target:  5'- -gGAaacGCGGGUGCGuGCGCCGG-CACg -3'
miRNA:   3'- caCUac-UGCCCGCGC-CGCGGCUgGUG- -5'
10988 3' -61.5 NC_002794.1 + 11646 0.75 0.27503
Target:  5'- ----cGACGGGCggccgacgacGCGGCccGCCGGCCACa -3'
miRNA:   3'- cacuaCUGCCCG----------CGCCG--CGGCUGGUG- -5'
10988 3' -61.5 NC_002794.1 + 12214 0.75 0.245599
Target:  5'- cGUGccGGCGGcGUcgGCGGCGCCGGCgGCg -3'
miRNA:   3'- -CACuaCUGCC-CG--CGCCGCGGCUGgUG- -5'
10988 3' -61.5 NC_002794.1 + 12414 0.66 0.747181
Target:  5'- -cGcgGAC-GGCGC-GCGCCGACUg- -3'
miRNA:   3'- caCuaCUGcCCGCGcCGCGGCUGGug -5'
10988 3' -61.5 NC_002794.1 + 14447 0.66 0.737954
Target:  5'- -cGAUGcuccGCGGGCgaccgugucgaGCGGCGC--GCCGCg -3'
miRNA:   3'- caCUAC----UGCCCG-----------CGCCGCGgcUGGUG- -5'
10988 3' -61.5 NC_002794.1 + 14779 0.66 0.700291
Target:  5'- cUGAggccGGCGaGGC-CGGCGUgaccgCGACCACg -3'
miRNA:   3'- cACUa---CUGC-CCGcGCCGCG-----GCUGGUG- -5'
10988 3' -61.5 NC_002794.1 + 19450 0.66 0.709804
Target:  5'- -cGA--GCGGGCacgaGCGGCGgCGGCgGCg -3'
miRNA:   3'- caCUacUGCCCG----CGCCGCgGCUGgUG- -5'
10988 3' -61.5 NC_002794.1 + 19525 0.66 0.700291
Target:  5'- -gGAgcGCcGGCGCGGCGCgGcCCGCc -3'
miRNA:   3'- caCUacUGcCCGCGCCGCGgCuGGUG- -5'
10988 3' -61.5 NC_002794.1 + 20546 0.66 0.756318
Target:  5'- -cGAcGACGGGCGacCGGauccCGCCGucgcuCCGCa -3'
miRNA:   3'- caCUaCUGCCCGC--GCC----GCGGCu----GGUG- -5'
10988 3' -61.5 NC_002794.1 + 21928 0.71 0.452018
Target:  5'- -cGAcGGCGgcGGCGCGGCGCucgucgaaggccguCGGCCGCu -3'
miRNA:   3'- caCUaCUGC--CCGCGCCGCG--------------GCUGGUG- -5'
10988 3' -61.5 NC_002794.1 + 22953 0.68 0.63268
Target:  5'- ----cGACGGGC-CGGCGCCGuuguCCc- -3'
miRNA:   3'- cacuaCUGCCCGcGCCGCGGCu---GGug -5'
10988 3' -61.5 NC_002794.1 + 24006 0.67 0.642397
Target:  5'- ----cGACGGGCcgccgucaccGCGGCGCCucGGCgACg -3'
miRNA:   3'- cacuaCUGCCCG----------CGCCGCGG--CUGgUG- -5'
10988 3' -61.5 NC_002794.1 + 32647 0.69 0.565015
Target:  5'- -cGAcGACcgGGGCGaCGGCGCCGuCCcCg -3'
miRNA:   3'- caCUaCUG--CCCGC-GCCGCGGCuGGuG- -5'
10988 3' -61.5 NC_002794.1 + 32866 0.74 0.307217
Target:  5'- -cGAgccGGCGGGCgGCGGCGgCGGCgGCg -3'
miRNA:   3'- caCUa--CUGCCCG-CGCCGCgGCUGgUG- -5'
10988 3' -61.5 NC_002794.1 + 34759 0.67 0.671474
Target:  5'- -cGcgGugGGaCGCGGCacgGCCGcCCGCg -3'
miRNA:   3'- caCuaCugCCcGCGCCG---CGGCuGGUG- -5'
10988 3' -61.5 NC_002794.1 + 34857 0.71 0.43735
Target:  5'- -gGA--GCGGGCGCcgcgGGCGCCGcggacGCCGCg -3'
miRNA:   3'- caCUacUGCCCGCG----CCGCGGC-----UGGUG- -5'
10988 3' -61.5 NC_002794.1 + 37274 0.66 0.728643
Target:  5'- -cGGgcgcGCGGGCGCGGCGUacaaCGAC-ACg -3'
miRNA:   3'- caCUac--UGCCCGCGCCGCG----GCUGgUG- -5'
10988 3' -61.5 NC_002794.1 + 37748 0.71 0.43735
Target:  5'- -cGgcGGCGGcGCgGCGGCGCCGGCgGg -3'
miRNA:   3'- caCuaCUGCC-CG-CGCCGCGGCUGgUg -5'
10988 3' -61.5 NC_002794.1 + 37883 0.71 0.445946
Target:  5'- -gGgcGGCGGGgGCGGUGgCGGCgGCa -3'
miRNA:   3'- caCuaCUGCCCgCGCCGCgGCUGgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.