miRNA display CGI


Results 21 - 40 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10988 3' -61.5 NC_002794.1 + 38435 0.66 0.709804
Target:  5'- aUGgcGGCGGGCcggacugaggaGcCGGCGC-GGCCGCg -3'
miRNA:   3'- cACuaCUGCCCG-----------C-GCCGCGgCUGGUG- -5'
10988 3' -61.5 NC_002794.1 + 38609 0.67 0.690727
Target:  5'- -aGAggccgGACGGGCGCGuC-CCGACuCGCc -3'
miRNA:   3'- caCUa----CUGCCCGCGCcGcGGCUG-GUG- -5'
10988 3' -61.5 NC_002794.1 + 42584 0.67 0.661801
Target:  5'- -cGcgGACggaggaGGGCGCGGCGgCCGGgaGCg -3'
miRNA:   3'- caCuaCUG------CCCGCGCCGC-GGCUggUG- -5'
10988 3' -61.5 NC_002794.1 + 43171 0.66 0.700291
Target:  5'- -cGgcGACGGaauagcgguuGCGC-GCGCCGACCGg -3'
miRNA:   3'- caCuaCUGCC----------CGCGcCGCGGCUGGUg -5'
10988 3' -61.5 NC_002794.1 + 44238 0.69 0.527147
Target:  5'- -cGGUGcCGGGCGgcuCGGUGCCGggcggcucgGCCGCc -3'
miRNA:   3'- caCUACuGCCCGC---GCCGCGGC---------UGGUG- -5'
10988 3' -61.5 NC_002794.1 + 46312 0.69 0.565015
Target:  5'- -cGAgcgcGGC-GGCGaCGGCGCCGucGCCGCg -3'
miRNA:   3'- caCUa---CUGcCCGC-GCCGCGGC--UGGUG- -5'
10988 3' -61.5 NC_002794.1 + 48049 0.67 0.671474
Target:  5'- aGUGcGUGcUGGGCaCGGCGCUGAUgGCc -3'
miRNA:   3'- -CAC-UACuGCCCGcGCCGCGGCUGgUG- -5'
10988 3' -61.5 NC_002794.1 + 48154 0.72 0.412149
Target:  5'- ----cGACGaGGCaGCGGCGCCGcuucacGCCGCu -3'
miRNA:   3'- cacuaCUGC-CCG-CGCCGCGGC------UGGUG- -5'
10988 3' -61.5 NC_002794.1 + 49021 0.66 0.728643
Target:  5'- ----cGGCGGcCGCGGCGUCGuCCGg -3'
miRNA:   3'- cacuaCUGCCcGCGCCGCGGCuGGUg -5'
10988 3' -61.5 NC_002794.1 + 49268 0.73 0.320876
Target:  5'- ----cGACGGGCGCuccaacggcccgGGCGCCG-CCGCc -3'
miRNA:   3'- cacuaCUGCCCGCG------------CCGCGGCuGGUG- -5'
10988 3' -61.5 NC_002794.1 + 49411 0.66 0.728643
Target:  5'- ----cGGCGGcCGCGGCGgCGGCgGCc -3'
miRNA:   3'- cacuaCUGCCcGCGCCGCgGCUGgUG- -5'
10988 3' -61.5 NC_002794.1 + 49602 0.7 0.490268
Target:  5'- -cGAUcGGCGacGGCG-GGCGCCGGCgGCg -3'
miRNA:   3'- caCUA-CUGC--CCGCgCCGCGGCUGgUG- -5'
10988 3' -61.5 NC_002794.1 + 50663 0.73 0.334984
Target:  5'- --cAUGGCGGcCGCGGCGCUcGCCGCg -3'
miRNA:   3'- cacUACUGCCcGCGCCGCGGcUGGUG- -5'
10988 3' -61.5 NC_002794.1 + 51066 0.66 0.700291
Target:  5'- -cGgcGACGGcgaccuccgaGCGUGGCGCgcucggaaaagaCGACCGCg -3'
miRNA:   3'- caCuaCUGCC----------CGCGCCGCG------------GCUGGUG- -5'
10988 3' -61.5 NC_002794.1 + 51260 0.69 0.555471
Target:  5'- cGUGggGGCGGGCcgggagGCaGGCGCgGcCCGCc -3'
miRNA:   3'- -CACuaCUGCCCG------CG-CCGCGgCuGGUG- -5'
10988 3' -61.5 NC_002794.1 + 52886 0.73 0.327874
Target:  5'- -cGAUgGugGGGUcgaacGCGGCGCCG-CCGCc -3'
miRNA:   3'- caCUA-CugCCCG-----CGCCGCGGCuGGUG- -5'
10988 3' -61.5 NC_002794.1 + 53271 0.68 0.63268
Target:  5'- -cGAcaACGGG-GCGGCGagCGACCACu -3'
miRNA:   3'- caCUacUGCCCgCGCCGCg-GCUGGUG- -5'
10988 3' -61.5 NC_002794.1 + 53522 0.67 0.652106
Target:  5'- -aGAUGGagaagccgUGGGCGCGGCgGCCGcacaGCC-Cg -3'
miRNA:   3'- caCUACU--------GCCCGCGCCG-CGGC----UGGuG- -5'
10988 3' -61.5 NC_002794.1 + 54860 0.66 0.747181
Target:  5'- ----aGGCcGGCGCGG-GCCG-CCGCa -3'
miRNA:   3'- cacuaCUGcCCGCGCCgCGGCuGGUG- -5'
10988 3' -61.5 NC_002794.1 + 55814 0.68 0.63268
Target:  5'- -cGGgcGCGGGCGC-GCGCUGAUgGCg -3'
miRNA:   3'- caCUacUGCCCGCGcCGCGGCUGgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.