miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10988 3' -61.5 NC_002794.1 + 193587 0.67 0.678229
Target:  5'- -cGGUGGCGGcucaccgucguguaGCguaccGCGGCGCCGugGCCAUc -3'
miRNA:   3'- caCUACUGCC--------------CG-----CGCCGCGGC--UGGUG- -5'
10988 3' -61.5 NC_002794.1 + 192001 0.71 0.42045
Target:  5'- -cGG-GACGGuaGCGGCGgUGGCCGCg -3'
miRNA:   3'- caCUaCUGCCcgCGCCGCgGCUGGUG- -5'
10988 3' -61.5 NC_002794.1 + 190755 0.66 0.737954
Target:  5'- ----cGACGGGgGCGGCG---GCCGCg -3'
miRNA:   3'- cacuaCUGCCCgCGCCGCggcUGGUG- -5'
10988 3' -61.5 NC_002794.1 + 185396 0.71 0.445946
Target:  5'- -aGAaGACgaGGGCGCgGGC-CCGACCGCc -3'
miRNA:   3'- caCUaCUG--CCCGCG-CCGcGGCUGGUG- -5'
10988 3' -61.5 NC_002794.1 + 184506 0.66 0.719257
Target:  5'- ----gGGCGGcgcgggccccgcGCGCGGCGCgGGCgACg -3'
miRNA:   3'- cacuaCUGCC------------CGCGCCGCGgCUGgUG- -5'
10988 3' -61.5 NC_002794.1 + 184052 0.68 0.63268
Target:  5'- -cGGUcGCGGGcCGCGGCGaagCGGCaCGCg -3'
miRNA:   3'- caCUAcUGCCC-GCGCCGCg--GCUG-GUG- -5'
10988 3' -61.5 NC_002794.1 + 182345 0.67 0.661801
Target:  5'- -aGcgGACGGGCG-GGCGggugaCCGGgCGCa -3'
miRNA:   3'- caCuaCUGCCCGCgCCGC-----GGCUgGUG- -5'
10988 3' -61.5 NC_002794.1 + 181763 0.67 0.681119
Target:  5'- -cGcUGACGccgauGGCGCcGCGCCG-CCGCg -3'
miRNA:   3'- caCuACUGC-----CCGCGcCGCGGCuGGUG- -5'
10988 3' -61.5 NC_002794.1 + 181376 0.68 0.626849
Target:  5'- -gGGUcACGGGCcCGGCcgucaguucgcccggGCCGGCCGCc -3'
miRNA:   3'- caCUAcUGCCCGcGCCG---------------CGGCUGGUG- -5'
10988 3' -61.5 NC_002794.1 + 180019 0.67 0.661801
Target:  5'- -cGAcGACGGcCGCGGcCGuCCGACCcGCa -3'
miRNA:   3'- caCUaCUGCCcGCGCC-GC-GGCUGG-UG- -5'
10988 3' -61.5 NC_002794.1 + 179692 0.66 0.728643
Target:  5'- -cGGUGGCGgcGGCGaCGGUggcgacGCCGGCgGCu -3'
miRNA:   3'- caCUACUGC--CCGC-GCCG------CGGCUGgUG- -5'
10988 3' -61.5 NC_002794.1 + 179427 0.68 0.622963
Target:  5'- -cGGgcccCGGGCGCggaGGCGUgGACCACc -3'
miRNA:   3'- caCUacu-GCCCGCG---CCGCGgCUGGUG- -5'
10988 3' -61.5 NC_002794.1 + 151584 0.68 0.593876
Target:  5'- ----cGGCGGcGCGCGcCGCCG-CCGCg -3'
miRNA:   3'- cacuaCUGCC-CGCGCcGCGGCuGGUG- -5'
10988 3' -61.5 NC_002794.1 + 151043 0.8 0.135502
Target:  5'- cUGAUGACGGGCGa-GUGCaCGGCCGCg -3'
miRNA:   3'- cACUACUGCCCGCgcCGCG-GCUGGUG- -5'
10988 3' -61.5 NC_002794.1 + 150599 0.66 0.747181
Target:  5'- -cGAgGACGGcCG-GGCGCCGGCUcuGCg -3'
miRNA:   3'- caCUaCUGCCcGCgCCGCGGCUGG--UG- -5'
10988 3' -61.5 NC_002794.1 + 150297 0.69 0.536533
Target:  5'- -cGGUGugGuGGCaGCGGaucaCCGGCCGCg -3'
miRNA:   3'- caCUACugC-CCG-CGCCgc--GGCUGGUG- -5'
10988 3' -61.5 NC_002794.1 + 149246 0.66 0.709804
Target:  5'- ----cGcCGGGguCGCGGCGCC-ACCACc -3'
miRNA:   3'- cacuaCuGCCC--GCGCCGCGGcUGGUG- -5'
10988 3' -61.5 NC_002794.1 + 148191 0.66 0.747181
Target:  5'- -gGA-GGgGGGUcucCGGCGCCGGCgCGCg -3'
miRNA:   3'- caCUaCUgCCCGc--GCCGCGGCUG-GUG- -5'
10988 3' -61.5 NC_002794.1 + 148126 0.77 0.19459
Target:  5'- -cGGUGuCGGGCGCGGgGCCG-CCGg -3'
miRNA:   3'- caCUACuGCCCGCGCCgCGGCuGGUg -5'
10988 3' -61.5 NC_002794.1 + 147695 0.66 0.756318
Target:  5'- ----cGGCGGcGaUGCGGCGCaCGugCGCc -3'
miRNA:   3'- cacuaCUGCC-C-GCGCCGCG-GCugGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.