miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10988 5' -54.2 NC_002794.1 + 56308 0.66 0.984673
Target:  5'- gCGGUcgcGGUCGCuGGCGGccguGGCCGgcgaCGCGg -3'
miRNA:   3'- -GCCA---CUAGUGcCCGCU----UUGGCa---GUGC- -5'
10988 5' -54.2 NC_002794.1 + 111087 0.66 0.984673
Target:  5'- uCGGcagGGUCgGCGGGCccggcGGGACCGUgGCc -3'
miRNA:   3'- -GCCa--CUAG-UGCCCG-----CUUUGGCAgUGc -5'
10988 5' -54.2 NC_002794.1 + 105719 0.66 0.984673
Target:  5'- aGGcGAUCGC-GGCG--GCCGUCGgGa -3'
miRNA:   3'- gCCaCUAGUGcCCGCuuUGGCAGUgC- -5'
10988 5' -54.2 NC_002794.1 + 137360 0.66 0.982851
Target:  5'- uCGG-GGUCuucuucgagcCGGGCGAGcGCCGaCGCGg -3'
miRNA:   3'- -GCCaCUAGu---------GCCCGCUU-UGGCaGUGC- -5'
10988 5' -54.2 NC_002794.1 + 177718 0.66 0.98087
Target:  5'- aCGGcGGUcCACgGGGCGGauccGACCGacUCGCGc -3'
miRNA:   3'- -GCCaCUA-GUG-CCCGCU----UUGGC--AGUGC- -5'
10988 5' -54.2 NC_002794.1 + 33835 0.66 0.98087
Target:  5'- cCGGUGAagGcCGuGGUGAccAGCCGgCACGa -3'
miRNA:   3'- -GCCACUagU-GC-CCGCU--UUGGCaGUGC- -5'
10988 5' -54.2 NC_002794.1 + 179991 0.66 0.98087
Target:  5'- gCGGUGGcCGCGacGGCGGGcCCGgcCACGa -3'
miRNA:   3'- -GCCACUaGUGC--CCGCUUuGGCa-GUGC- -5'
10988 5' -54.2 NC_002794.1 + 139109 0.66 0.980663
Target:  5'- uGGgcacGA-CGCGGGCGAucacggaGACggCGUCGCGg -3'
miRNA:   3'- gCCa---CUaGUGCCCGCU-------UUG--GCAGUGC- -5'
10988 5' -54.2 NC_002794.1 + 148125 0.66 0.978723
Target:  5'- uCGGUGucgggCGCggggccgccgGGGCGAgGGCgGUCGCGa -3'
miRNA:   3'- -GCCACua---GUG----------CCCGCU-UUGgCAGUGC- -5'
10988 5' -54.2 NC_002794.1 + 119148 0.66 0.974924
Target:  5'- gGGUGGUCGCGcagcagguccGCGAAggccucggggaggugGCCGUUACa -3'
miRNA:   3'- gCCACUAGUGCc---------CGCUU---------------UGGCAGUGc -5'
10988 5' -54.2 NC_002794.1 + 36370 0.66 0.973901
Target:  5'- gGGUGcgCGCccgcGGCGAAGCgGUCGa- -3'
miRNA:   3'- gCCACuaGUGc---CCGCUUUGgCAGUgc -5'
10988 5' -54.2 NC_002794.1 + 71803 0.66 0.973901
Target:  5'- cCGGcGggCGC-GGCGAGGCCGccucgUCGCGa -3'
miRNA:   3'- -GCCaCuaGUGcCCGCUUUGGC-----AGUGC- -5'
10988 5' -54.2 NC_002794.1 + 157047 0.66 0.973901
Target:  5'- ---aGAgu-CcGGCGAGACCGUCGCGg -3'
miRNA:   3'- gccaCUaguGcCCGCUUUGGCAGUGC- -5'
10988 5' -54.2 NC_002794.1 + 90463 0.66 0.973901
Target:  5'- uCGGcGAggccgCGCGcGGCGggGCCGccgucccgCGCGa -3'
miRNA:   3'- -GCCaCUa----GUGC-CCGCuuUGGCa-------GUGC- -5'
10988 5' -54.2 NC_002794.1 + 156506 0.66 0.973641
Target:  5'- gCGGcccguUGAUCGCGaguccgcGGUGAGgguuCCGUCGCGu -3'
miRNA:   3'- -GCC-----ACUAGUGC-------CCGCUUu---GGCAGUGC- -5'
10988 5' -54.2 NC_002794.1 + 141582 0.67 0.972311
Target:  5'- -cGUGAUCAugacgcccgcgucgcCGGGCGGcucggcGACCGgcUCGCGg -3'
miRNA:   3'- gcCACUAGU---------------GCCCGCU------UUGGC--AGUGC- -5'
10988 5' -54.2 NC_002794.1 + 129834 0.67 0.971213
Target:  5'- gCGGaaGUCgagGCGGaGCGGAAccuCCGUCGCGa -3'
miRNA:   3'- -GCCacUAG---UGCC-CGCUUU---GGCAGUGC- -5'
10988 5' -54.2 NC_002794.1 + 178342 0.67 0.970934
Target:  5'- uGGUGAcCGCGuGGCGAcgauguACCGgugaggaggacgcUCACGa -3'
miRNA:   3'- gCCACUaGUGC-CCGCUu-----UGGC-------------AGUGC- -5'
10988 5' -54.2 NC_002794.1 + 2714 0.67 0.968332
Target:  5'- gGGcGGUCugGGGCGGucuuuggcGACCGagACc -3'
miRNA:   3'- gCCaCUAGugCCCGCU--------UUGGCagUGc -5'
10988 5' -54.2 NC_002794.1 + 123265 0.67 0.965251
Target:  5'- cCGGcUGGUC-CGGGcCGcgGUCGUCGCGg -3'
miRNA:   3'- -GCC-ACUAGuGCCC-GCuuUGGCAGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.