Results 1 - 20 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10988 | 5' | -54.2 | NC_002794.1 | + | 56308 | 0.66 | 0.984673 |
Target: 5'- gCGGUcgcGGUCGCuGGCGGccguGGCCGgcgaCGCGg -3' miRNA: 3'- -GCCA---CUAGUGcCCGCU----UUGGCa---GUGC- -5' |
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10988 | 5' | -54.2 | NC_002794.1 | + | 36370 | 0.66 | 0.973901 |
Target: 5'- gGGUGcgCGCccgcGGCGAAGCgGUCGa- -3' miRNA: 3'- gCCACuaGUGc---CCGCUUUGgCAGUgc -5' |
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10988 | 5' | -54.2 | NC_002794.1 | + | 156506 | 0.66 | 0.973641 |
Target: 5'- gCGGcccguUGAUCGCGaguccgcGGUGAGgguuCCGUCGCGu -3' miRNA: 3'- -GCC-----ACUAGUGC-------CCGCUUu---GGCAGUGC- -5' |
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10988 | 5' | -54.2 | NC_002794.1 | + | 71803 | 0.66 | 0.973901 |
Target: 5'- cCGGcGggCGC-GGCGAGGCCGccucgUCGCGa -3' miRNA: 3'- -GCCaCuaGUGcCCGCUUUGGC-----AGUGC- -5' |
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10988 | 5' | -54.2 | NC_002794.1 | + | 157047 | 0.66 | 0.973901 |
Target: 5'- ---aGAgu-CcGGCGAGACCGUCGCGg -3' miRNA: 3'- gccaCUaguGcCCGCUUUGGCAGUGC- -5' |
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10988 | 5' | -54.2 | NC_002794.1 | + | 90463 | 0.66 | 0.973901 |
Target: 5'- uCGGcGAggccgCGCGcGGCGggGCCGccgucccgCGCGa -3' miRNA: 3'- -GCCaCUa----GUGC-CCGCuuUGGCa-------GUGC- -5' |
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10988 | 5' | -54.2 | NC_002794.1 | + | 119148 | 0.66 | 0.974924 |
Target: 5'- gGGUGGUCGCGcagcagguccGCGAAggccucggggaggugGCCGUUACa -3' miRNA: 3'- gCCACUAGUGCc---------CGCUU---------------UGGCAGUGc -5' |
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10988 | 5' | -54.2 | NC_002794.1 | + | 148125 | 0.66 | 0.978723 |
Target: 5'- uCGGUGucgggCGCggggccgccgGGGCGAgGGCgGUCGCGa -3' miRNA: 3'- -GCCACua---GUG----------CCCGCU-UUGgCAGUGC- -5' |
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10988 | 5' | -54.2 | NC_002794.1 | + | 139109 | 0.66 | 0.980663 |
Target: 5'- uGGgcacGA-CGCGGGCGAucacggaGACggCGUCGCGg -3' miRNA: 3'- gCCa---CUaGUGCCCGCU-------UUG--GCAGUGC- -5' |
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10988 | 5' | -54.2 | NC_002794.1 | + | 111087 | 0.66 | 0.984673 |
Target: 5'- uCGGcagGGUCgGCGGGCccggcGGGACCGUgGCc -3' miRNA: 3'- -GCCa--CUAG-UGCCCG-----CUUUGGCAgUGc -5' |
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10988 | 5' | -54.2 | NC_002794.1 | + | 105719 | 0.66 | 0.984673 |
Target: 5'- aGGcGAUCGC-GGCG--GCCGUCGgGa -3' miRNA: 3'- gCCaCUAGUGcCCGCuuUGGCAGUgC- -5' |
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10988 | 5' | -54.2 | NC_002794.1 | + | 179991 | 0.66 | 0.98087 |
Target: 5'- gCGGUGGcCGCGacGGCGGGcCCGgcCACGa -3' miRNA: 3'- -GCCACUaGUGC--CCGCUUuGGCa-GUGC- -5' |
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10988 | 5' | -54.2 | NC_002794.1 | + | 33835 | 0.66 | 0.98087 |
Target: 5'- cCGGUGAagGcCGuGGUGAccAGCCGgCACGa -3' miRNA: 3'- -GCCACUagU-GC-CCGCU--UUGGCaGUGC- -5' |
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10988 | 5' | -54.2 | NC_002794.1 | + | 137360 | 0.66 | 0.982851 |
Target: 5'- uCGG-GGUCuucuucgagcCGGGCGAGcGCCGaCGCGg -3' miRNA: 3'- -GCCaCUAGu---------GCCCGCUU-UGGCaGUGC- -5' |
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10988 | 5' | -54.2 | NC_002794.1 | + | 177718 | 0.66 | 0.98087 |
Target: 5'- aCGGcGGUcCACgGGGCGGauccGACCGacUCGCGc -3' miRNA: 3'- -GCCaCUA-GUG-CCCGCU----UUGGC--AGUGC- -5' |
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10988 | 5' | -54.2 | NC_002794.1 | + | 178342 | 0.67 | 0.970934 |
Target: 5'- uGGUGAcCGCGuGGCGAcgauguACCGgugaggaggacgcUCACGa -3' miRNA: 3'- gCCACUaGUGC-CCGCUu-----UGGC-------------AGUGC- -5' |
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10988 | 5' | -54.2 | NC_002794.1 | + | 129834 | 0.67 | 0.971213 |
Target: 5'- gCGGaaGUCgagGCGGaGCGGAAccuCCGUCGCGa -3' miRNA: 3'- -GCCacUAG---UGCC-CGCUUU---GGCAGUGC- -5' |
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10988 | 5' | -54.2 | NC_002794.1 | + | 2714 | 0.67 | 0.968332 |
Target: 5'- gGGcGGUCugGGGCGGucuuuggcGACCGagACc -3' miRNA: 3'- gCCaCUAGugCCCGCU--------UUGGCagUGc -5' |
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10988 | 5' | -54.2 | NC_002794.1 | + | 37365 | 0.67 | 0.965251 |
Target: 5'- aGGUaGUCGaagcuCGGGCGcAGGCCGUCGa- -3' miRNA: 3'- gCCAcUAGU-----GCCCGC-UUUGGCAGUgc -5' |
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10988 | 5' | -54.2 | NC_002794.1 | + | 123265 | 0.67 | 0.965251 |
Target: 5'- cCGGcUGGUC-CGGGcCGcgGUCGUCGCGg -3' miRNA: 3'- -GCC-ACUAGuGCCC-GCuuUGGCAGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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