miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10988 5' -54.2 NC_002794.1 + 105211 0.76 0.596696
Target:  5'- gCGGUGAUCA-GGGuCGAcagGGCCGUgCGCGg -3'
miRNA:   3'- -GCCACUAGUgCCC-GCU---UUGGCA-GUGC- -5'
10988 5' -54.2 NC_002794.1 + 80418 0.76 0.606689
Target:  5'- aGGUGG-CGcCGGGCGggGCCGcCGCc -3'
miRNA:   3'- gCCACUaGU-GCCCGCuuUGGCaGUGc -5'
10988 5' -54.2 NC_002794.1 + 181368 0.76 0.616701
Target:  5'- cCGGUugagGGUCACGGGCccGGCCGUCAg- -3'
miRNA:   3'- -GCCA----CUAGUGCCCGcuUUGGCAGUgc -5'
10988 5' -54.2 NC_002794.1 + 111603 0.76 0.616701
Target:  5'- gGGUGAUCucccagGCcGGCGggGCCGcCGCGg -3'
miRNA:   3'- gCCACUAG------UGcCCGCuuUGGCaGUGC- -5'
10988 5' -54.2 NC_002794.1 + 127989 0.74 0.716173
Target:  5'- uGGUGGUguCuGGGCGGacGACCGUCGuCGg -3'
miRNA:   3'- gCCACUAguG-CCCGCU--UUGGCAGU-GC- -5'
10988 5' -54.2 NC_002794.1 + 129066 0.73 0.745051
Target:  5'- aCGGUGuGUCGCGgcuGGCGGcgGACCGUC-CGg -3'
miRNA:   3'- -GCCAC-UAGUGC---CCGCU--UUGGCAGuGC- -5'
10988 5' -54.2 NC_002794.1 + 156014 0.73 0.773076
Target:  5'- aCGGgGGucUCAUGGGuCGcAGCCGUCGCGu -3'
miRNA:   3'- -GCCaCU--AGUGCCC-GCuUUGGCAGUGC- -5'
10988 5' -54.2 NC_002794.1 + 71716 0.72 0.800013
Target:  5'- aGGUGAUCucCGGGuCGuuGGCCGcCACGc -3'
miRNA:   3'- gCCACUAGu-GCCC-GCu-UUGGCaGUGC- -5'
10988 5' -54.2 NC_002794.1 + 183592 0.72 0.800013
Target:  5'- aCGGUGGggGCGGaGgGggGCCGcgCGCGg -3'
miRNA:   3'- -GCCACUagUGCC-CgCuuUGGCa-GUGC- -5'
10988 5' -54.2 NC_002794.1 + 182573 0.72 0.817258
Target:  5'- cCGG-GAUCuccguGCGGGCGAcGAUgGUCGCGu -3'
miRNA:   3'- -GCCaCUAG-----UGCCCGCU-UUGgCAGUGC- -5'
10988 5' -54.2 NC_002794.1 + 128250 0.71 0.833856
Target:  5'- aCGGUcgucuGGUCGCGGuCGggGCCGagCGCGg -3'
miRNA:   3'- -GCCA-----CUAGUGCCcGCuuUGGCa-GUGC- -5'
10988 5' -54.2 NC_002794.1 + 145049 0.71 0.86415
Target:  5'- aGGUGGUcaacuucaccgagCugGcGGCGggGCCGgacagCACGg -3'
miRNA:   3'- gCCACUA-------------GugC-CCGCuuUGGCa----GUGC- -5'
10988 5' -54.2 NC_002794.1 + 43998 0.7 0.879221
Target:  5'- aCGuGUGGgagCACGGcGCGGccggcguccgcaGACCGUCGCu -3'
miRNA:   3'- -GC-CACUa--GUGCC-CGCU------------UUGGCAGUGc -5'
10988 5' -54.2 NC_002794.1 + 189843 0.7 0.879221
Target:  5'- gCGG-GGUCuCGGccGCGGAGCCGUCgGCGu -3'
miRNA:   3'- -GCCaCUAGuGCC--CGCUUUGGCAG-UGC- -5'
10988 5' -54.2 NC_002794.1 + 49410 0.7 0.879221
Target:  5'- aCGGcGGcCGCGgcGGCGGcGGCCGUCACGg -3'
miRNA:   3'- -GCCaCUaGUGC--CCGCU-UUGGCAGUGC- -5'
10988 5' -54.2 NC_002794.1 + 119503 0.7 0.892709
Target:  5'- uCGG-GGUCgucgGCGGcGCGGAGCCGgcCGCGg -3'
miRNA:   3'- -GCCaCUAG----UGCC-CGCUUUGGCa-GUGC- -5'
10988 5' -54.2 NC_002794.1 + 11932 0.7 0.899127
Target:  5'- aCGGUGAUCGCGaucgcGGUGAGcgugcucuCCGUCuACGc -3'
miRNA:   3'- -GCCACUAGUGC-----CCGCUUu-------GGCAG-UGC- -5'
10988 5' -54.2 NC_002794.1 + 32694 0.69 0.905322
Target:  5'- cCGGagGcGUCGCGGGCGAcucGCCGcCACc -3'
miRNA:   3'- -GCCa-C-UAGUGCCCGCUu--UGGCaGUGc -5'
10988 5' -54.2 NC_002794.1 + 24827 0.69 0.905322
Target:  5'- aCGacgGGUCACGGG-GAGACC-UCGCGa -3'
miRNA:   3'- -GCca-CUAGUGCCCgCUUUGGcAGUGC- -5'
10988 5' -54.2 NC_002794.1 + 139893 0.69 0.905322
Target:  5'- uCGGUGAU-GCGGGCcagccgcAGGCCGUCggACGg -3'
miRNA:   3'- -GCCACUAgUGCCCGc------UUUGGCAG--UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.