miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10988 5' -54.2 NC_002794.1 + 37365 0.67 0.965251
Target:  5'- aGGUaGUCGaagcuCGGGCGcAGGCCGUCGa- -3'
miRNA:   3'- gCCAcUAGU-----GCCCGC-UUUGGCAGUgc -5'
10988 5' -54.2 NC_002794.1 + 131022 0.67 0.961966
Target:  5'- uCGGUGGUCguGCGGcGCGGccGGCUGcCGCc -3'
miRNA:   3'- -GCCACUAG--UGCC-CGCU--UUGGCaGUGc -5'
10988 5' -54.2 NC_002794.1 + 32889 0.67 0.961966
Target:  5'- gCGGcgGcAUCAUGGaGCGGAACCaGUCggGCGg -3'
miRNA:   3'- -GCCa-C-UAGUGCC-CGCUUUGG-CAG--UGC- -5'
10988 5' -54.2 NC_002794.1 + 106351 0.67 0.961966
Target:  5'- gGGUcGAcgGCGGGCGGGcGCCGguucgCGCGg -3'
miRNA:   3'- gCCA-CUagUGCCCGCUU-UGGCa----GUGC- -5'
10988 5' -54.2 NC_002794.1 + 151043 0.67 0.958472
Target:  5'- --cUGAUgACGGGCGAGugCacggccgcgcagGUCGCGg -3'
miRNA:   3'- gccACUAgUGCCCGCUUugG------------CAGUGC- -5'
10988 5' -54.2 NC_002794.1 + 65934 0.68 0.950837
Target:  5'- gCGGUGGcgUCGgcGGCGguAUCGUCGCGa -3'
miRNA:   3'- -GCCACU--AGUgcCCGCuuUGGCAGUGC- -5'
10988 5' -54.2 NC_002794.1 + 55314 0.68 0.946688
Target:  5'- gCGGcGggCGCGGGCGGcuuccgagGACCcgggGUCGCGc -3'
miRNA:   3'- -GCCaCuaGUGCCCGCU--------UUGG----CAGUGC- -5'
10988 5' -54.2 NC_002794.1 + 94218 0.68 0.946688
Target:  5'- aCGGUGGcggCgACGGGCGGgcgGGCCgGUgACGg -3'
miRNA:   3'- -GCCACUa--G-UGCCCGCU---UUGG-CAgUGC- -5'
10988 5' -54.2 NC_002794.1 + 160741 0.68 0.942316
Target:  5'- uGGUGGU--UGGGCGAGAgCGUgACu -3'
miRNA:   3'- gCCACUAguGCCCGCUUUgGCAgUGc -5'
10988 5' -54.2 NC_002794.1 + 117387 0.68 0.942316
Target:  5'- ---cGGUCGC-GGCGAAgcgggccuccACCGUCGCGa -3'
miRNA:   3'- gccaCUAGUGcCCGCUU----------UGGCAGUGC- -5'
10988 5' -54.2 NC_002794.1 + 66000 0.68 0.942316
Target:  5'- gCGGUGAUCcCGGcacCGAGGCgGcCGCGg -3'
miRNA:   3'- -GCCACUAGuGCCc--GCUUUGgCaGUGC- -5'
10988 5' -54.2 NC_002794.1 + 140128 0.68 0.937717
Target:  5'- aCGGUGG--GCGGGUggggaacgacGAGGCgGUCGCGc -3'
miRNA:   3'- -GCCACUagUGCCCG----------CUUUGgCAGUGC- -5'
10988 5' -54.2 NC_002794.1 + 113160 0.69 0.932891
Target:  5'- aGcGUGuagcgcgCGCGGGCGGcGGCgGUCGCGg -3'
miRNA:   3'- gC-CACua-----GUGCCCGCU-UUGgCAGUGC- -5'
10988 5' -54.2 NC_002794.1 + 91751 0.69 0.932891
Target:  5'- aGGUGccgGCGGGCGgcACCG-CGCa -3'
miRNA:   3'- gCCACuagUGCCCGCuuUGGCaGUGc -5'
10988 5' -54.2 NC_002794.1 + 147837 0.69 0.929885
Target:  5'- cCGGUGGUCGagccguugugcauccUGGGCG---UCGUCGCGc -3'
miRNA:   3'- -GCCACUAGU---------------GCCCGCuuuGGCAGUGC- -5'
10988 5' -54.2 NC_002794.1 + 130160 0.69 0.927835
Target:  5'- gCGG-GAUCACGcGcGCGAGAgCCGcCGCa -3'
miRNA:   3'- -GCCaCUAGUGC-C-CGCUUU-GGCaGUGc -5'
10988 5' -54.2 NC_002794.1 + 133077 0.69 0.927835
Target:  5'- gCGGUGAUCGgGGG-GAcuuugaugauGACCGUCuuGu -3'
miRNA:   3'- -GCCACUAGUgCCCgCU----------UUGGCAGugC- -5'
10988 5' -54.2 NC_002794.1 + 102378 0.69 0.917035
Target:  5'- aCGGUGGUCcgcgACGuGGUGGAACUGgucuucCGCGa -3'
miRNA:   3'- -GCCACUAG----UGC-CCGCUUUGGCa-----GUGC- -5'
10988 5' -54.2 NC_002794.1 + 144299 0.69 0.916471
Target:  5'- cCGGUGGaCgaggaggACGGGCcGAGCUGUUACGa -3'
miRNA:   3'- -GCCACUaG-------UGCCCGcUUUGGCAGUGC- -5'
10988 5' -54.2 NC_002794.1 + 139893 0.69 0.905322
Target:  5'- uCGGUGAU-GCGGGCcagccgcAGGCCGUCggACGg -3'
miRNA:   3'- -GCCACUAgUGCCCGc------UUUGGCAG--UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.