miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10988 5' -54.2 NC_002794.1 + 2714 0.67 0.968332
Target:  5'- gGGcGGUCugGGGCGGucuuuggcGACCGagACc -3'
miRNA:   3'- gCCaCUAGugCCCGCU--------UUGGCagUGc -5'
10988 5' -54.2 NC_002794.1 + 11932 0.7 0.899127
Target:  5'- aCGGUGAUCGCGaucgcGGUGAGcgugcucuCCGUCuACGc -3'
miRNA:   3'- -GCCACUAGUGC-----CCGCUUu-------GGCAG-UGC- -5'
10988 5' -54.2 NC_002794.1 + 24827 0.69 0.905322
Target:  5'- aCGacgGGUCACGGG-GAGACC-UCGCGa -3'
miRNA:   3'- -GCca-CUAGUGCCCgCUUUGGcAGUGC- -5'
10988 5' -54.2 NC_002794.1 + 32694 0.69 0.905322
Target:  5'- cCGGagGcGUCGCGGGCGAcucGCCGcCACc -3'
miRNA:   3'- -GCCa-C-UAGUGCCCGCUu--UGGCaGUGc -5'
10988 5' -54.2 NC_002794.1 + 32889 0.67 0.961966
Target:  5'- gCGGcgGcAUCAUGGaGCGGAACCaGUCggGCGg -3'
miRNA:   3'- -GCCa-C-UAGUGCC-CGCUUUGG-CAG--UGC- -5'
10988 5' -54.2 NC_002794.1 + 33835 0.66 0.98087
Target:  5'- cCGGUGAagGcCGuGGUGAccAGCCGgCACGa -3'
miRNA:   3'- -GCCACUagU-GC-CCGCU--UUGGCaGUGC- -5'
10988 5' -54.2 NC_002794.1 + 36370 0.66 0.973901
Target:  5'- gGGUGcgCGCccgcGGCGAAGCgGUCGa- -3'
miRNA:   3'- gCCACuaGUGc---CCGCUUUGgCAGUgc -5'
10988 5' -54.2 NC_002794.1 + 37365 0.67 0.965251
Target:  5'- aGGUaGUCGaagcuCGGGCGcAGGCCGUCGa- -3'
miRNA:   3'- gCCAcUAGU-----GCCCGC-UUUGGCAGUgc -5'
10988 5' -54.2 NC_002794.1 + 43998 0.7 0.879221
Target:  5'- aCGuGUGGgagCACGGcGCGGccggcguccgcaGACCGUCGCu -3'
miRNA:   3'- -GC-CACUa--GUGCC-CGCU------------UUGGCAGUGc -5'
10988 5' -54.2 NC_002794.1 + 49410 0.7 0.879221
Target:  5'- aCGGcGGcCGCGgcGGCGGcGGCCGUCACGg -3'
miRNA:   3'- -GCCaCUaGUGC--CCGCU-UUGGCAGUGC- -5'
10988 5' -54.2 NC_002794.1 + 55314 0.68 0.946688
Target:  5'- gCGGcGggCGCGGGCGGcuuccgagGACCcgggGUCGCGc -3'
miRNA:   3'- -GCCaCuaGUGCCCGCU--------UUGG----CAGUGC- -5'
10988 5' -54.2 NC_002794.1 + 56308 0.66 0.984673
Target:  5'- gCGGUcgcGGUCGCuGGCGGccguGGCCGgcgaCGCGg -3'
miRNA:   3'- -GCCA---CUAGUGcCCGCU----UUGGCa---GUGC- -5'
10988 5' -54.2 NC_002794.1 + 65934 0.68 0.950837
Target:  5'- gCGGUGGcgUCGgcGGCGguAUCGUCGCGa -3'
miRNA:   3'- -GCCACU--AGUgcCCGCuuUGGCAGUGC- -5'
10988 5' -54.2 NC_002794.1 + 66000 0.68 0.942316
Target:  5'- gCGGUGAUCcCGGcacCGAGGCgGcCGCGg -3'
miRNA:   3'- -GCCACUAGuGCCc--GCUUUGgCaGUGC- -5'
10988 5' -54.2 NC_002794.1 + 71716 0.72 0.800013
Target:  5'- aGGUGAUCucCGGGuCGuuGGCCGcCACGc -3'
miRNA:   3'- gCCACUAGu-GCCC-GCu-UUGGCaGUGC- -5'
10988 5' -54.2 NC_002794.1 + 71803 0.66 0.973901
Target:  5'- cCGGcGggCGC-GGCGAGGCCGccucgUCGCGa -3'
miRNA:   3'- -GCCaCuaGUGcCCGCUUUGGC-----AGUGC- -5'
10988 5' -54.2 NC_002794.1 + 80418 0.76 0.606689
Target:  5'- aGGUGG-CGcCGGGCGggGCCGcCGCc -3'
miRNA:   3'- gCCACUaGU-GCCCGCuuUGGCaGUGc -5'
10988 5' -54.2 NC_002794.1 + 90463 0.66 0.973901
Target:  5'- uCGGcGAggccgCGCGcGGCGggGCCGccgucccgCGCGa -3'
miRNA:   3'- -GCCaCUa----GUGC-CCGCuuUGGCa-------GUGC- -5'
10988 5' -54.2 NC_002794.1 + 91751 0.69 0.932891
Target:  5'- aGGUGccgGCGGGCGgcACCG-CGCa -3'
miRNA:   3'- gCCACuagUGCCCGCuuUGGCaGUGc -5'
10988 5' -54.2 NC_002794.1 + 94218 0.68 0.946688
Target:  5'- aCGGUGGcggCgACGGGCGGgcgGGCCgGUgACGg -3'
miRNA:   3'- -GCCACUa--G-UGCCCGCU---UUGG-CAgUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.