miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10988 5' -54.2 NC_002794.1 + 102378 0.69 0.917035
Target:  5'- aCGGUGGUCcgcgACGuGGUGGAACUGgucuucCGCGa -3'
miRNA:   3'- -GCCACUAG----UGC-CCGCUUUGGCa-----GUGC- -5'
10988 5' -54.2 NC_002794.1 + 105211 0.76 0.596696
Target:  5'- gCGGUGAUCA-GGGuCGAcagGGCCGUgCGCGg -3'
miRNA:   3'- -GCCACUAGUgCCC-GCU---UUGGCA-GUGC- -5'
10988 5' -54.2 NC_002794.1 + 105719 0.66 0.984673
Target:  5'- aGGcGAUCGC-GGCG--GCCGUCGgGa -3'
miRNA:   3'- gCCaCUAGUGcCCGCuuUGGCAGUgC- -5'
10988 5' -54.2 NC_002794.1 + 106351 0.67 0.961966
Target:  5'- gGGUcGAcgGCGGGCGGGcGCCGguucgCGCGg -3'
miRNA:   3'- gCCA-CUagUGCCCGCUU-UGGCa----GUGC- -5'
10988 5' -54.2 NC_002794.1 + 111087 0.66 0.984673
Target:  5'- uCGGcagGGUCgGCGGGCccggcGGGACCGUgGCc -3'
miRNA:   3'- -GCCa--CUAG-UGCCCG-----CUUUGGCAgUGc -5'
10988 5' -54.2 NC_002794.1 + 111603 0.76 0.616701
Target:  5'- gGGUGAUCucccagGCcGGCGggGCCGcCGCGg -3'
miRNA:   3'- gCCACUAG------UGcCCGCuuUGGCaGUGC- -5'
10988 5' -54.2 NC_002794.1 + 113160 0.69 0.932891
Target:  5'- aGcGUGuagcgcgCGCGGGCGGcGGCgGUCGCGg -3'
miRNA:   3'- gC-CACua-----GUGCCCGCU-UUGgCAGUGC- -5'
10988 5' -54.2 NC_002794.1 + 117387 0.68 0.942316
Target:  5'- ---cGGUCGC-GGCGAAgcgggccuccACCGUCGCGa -3'
miRNA:   3'- gccaCUAGUGcCCGCUU----------UGGCAGUGC- -5'
10988 5' -54.2 NC_002794.1 + 119148 0.66 0.974924
Target:  5'- gGGUGGUCGCGcagcagguccGCGAAggccucggggaggugGCCGUUACa -3'
miRNA:   3'- gCCACUAGUGCc---------CGCUU---------------UGGCAGUGc -5'
10988 5' -54.2 NC_002794.1 + 119503 0.7 0.892709
Target:  5'- uCGG-GGUCgucgGCGGcGCGGAGCCGgcCGCGg -3'
miRNA:   3'- -GCCaCUAG----UGCC-CGCUUUGGCa-GUGC- -5'
10988 5' -54.2 NC_002794.1 + 123265 0.67 0.965251
Target:  5'- cCGGcUGGUC-CGGGcCGcgGUCGUCGCGg -3'
miRNA:   3'- -GCC-ACUAGuGCCC-GCuuUGGCAGUGC- -5'
10988 5' -54.2 NC_002794.1 + 127989 0.74 0.716173
Target:  5'- uGGUGGUguCuGGGCGGacGACCGUCGuCGg -3'
miRNA:   3'- gCCACUAguG-CCCGCU--UUGGCAGU-GC- -5'
10988 5' -54.2 NC_002794.1 + 128250 0.71 0.833856
Target:  5'- aCGGUcgucuGGUCGCGGuCGggGCCGagCGCGg -3'
miRNA:   3'- -GCCA-----CUAGUGCCcGCuuUGGCa-GUGC- -5'
10988 5' -54.2 NC_002794.1 + 129066 0.73 0.745051
Target:  5'- aCGGUGuGUCGCGgcuGGCGGcgGACCGUC-CGg -3'
miRNA:   3'- -GCCAC-UAGUGC---CCGCU--UUGGCAGuGC- -5'
10988 5' -54.2 NC_002794.1 + 129834 0.67 0.971213
Target:  5'- gCGGaaGUCgagGCGGaGCGGAAccuCCGUCGCGa -3'
miRNA:   3'- -GCCacUAG---UGCC-CGCUUU---GGCAGUGC- -5'
10988 5' -54.2 NC_002794.1 + 130160 0.69 0.927835
Target:  5'- gCGG-GAUCACGcGcGCGAGAgCCGcCGCa -3'
miRNA:   3'- -GCCaCUAGUGC-C-CGCUUU-GGCaGUGc -5'
10988 5' -54.2 NC_002794.1 + 131022 0.67 0.961966
Target:  5'- uCGGUGGUCguGCGGcGCGGccGGCUGcCGCc -3'
miRNA:   3'- -GCCACUAG--UGCC-CGCU--UUGGCaGUGc -5'
10988 5' -54.2 NC_002794.1 + 133077 0.69 0.927835
Target:  5'- gCGGUGAUCGgGGG-GAcuuugaugauGACCGUCuuGu -3'
miRNA:   3'- -GCCACUAGUgCCCgCU----------UUGGCAGugC- -5'
10988 5' -54.2 NC_002794.1 + 137360 0.66 0.982851
Target:  5'- uCGG-GGUCuucuucgagcCGGGCGAGcGCCGaCGCGg -3'
miRNA:   3'- -GCCaCUAGu---------GCCCGCUU-UGGCaGUGC- -5'
10988 5' -54.2 NC_002794.1 + 139109 0.66 0.980663
Target:  5'- uGGgcacGA-CGCGGGCGAucacggaGACggCGUCGCGg -3'
miRNA:   3'- gCCa---CUaGUGCCCGCU-------UUG--GCAGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.