Results 1 - 20 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10988 | 5' | -54.2 | NC_002794.1 | + | 189843 | 0.7 | 0.879221 |
Target: 5'- gCGG-GGUCuCGGccGCGGAGCCGUCgGCGu -3' miRNA: 3'- -GCCaCUAGuGCC--CGCUUUGGCAG-UGC- -5' |
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10988 | 5' | -54.2 | NC_002794.1 | + | 183592 | 0.72 | 0.800013 |
Target: 5'- aCGGUGGggGCGGaGgGggGCCGcgCGCGg -3' miRNA: 3'- -GCCACUagUGCC-CgCuuUGGCa-GUGC- -5' |
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10988 | 5' | -54.2 | NC_002794.1 | + | 182573 | 0.72 | 0.817258 |
Target: 5'- cCGG-GAUCuccguGCGGGCGAcGAUgGUCGCGu -3' miRNA: 3'- -GCCaCUAG-----UGCCCGCU-UUGgCAGUGC- -5' |
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10988 | 5' | -54.2 | NC_002794.1 | + | 181368 | 0.76 | 0.616701 |
Target: 5'- cCGGUugagGGUCACGGGCccGGCCGUCAg- -3' miRNA: 3'- -GCCA----CUAGUGCCCGcuUUGGCAGUgc -5' |
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10988 | 5' | -54.2 | NC_002794.1 | + | 179991 | 0.66 | 0.98087 |
Target: 5'- gCGGUGGcCGCGacGGCGGGcCCGgcCACGa -3' miRNA: 3'- -GCCACUaGUGC--CCGCUUuGGCa-GUGC- -5' |
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10988 | 5' | -54.2 | NC_002794.1 | + | 178342 | 0.67 | 0.970934 |
Target: 5'- uGGUGAcCGCGuGGCGAcgauguACCGgugaggaggacgcUCACGa -3' miRNA: 3'- gCCACUaGUGC-CCGCUu-----UGGC-------------AGUGC- -5' |
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10988 | 5' | -54.2 | NC_002794.1 | + | 177718 | 0.66 | 0.98087 |
Target: 5'- aCGGcGGUcCACgGGGCGGauccGACCGacUCGCGc -3' miRNA: 3'- -GCCaCUA-GUG-CCCGCU----UUGGC--AGUGC- -5' |
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10988 | 5' | -54.2 | NC_002794.1 | + | 160741 | 0.68 | 0.942316 |
Target: 5'- uGGUGGU--UGGGCGAGAgCGUgACu -3' miRNA: 3'- gCCACUAguGCCCGCUUUgGCAgUGc -5' |
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10988 | 5' | -54.2 | NC_002794.1 | + | 157047 | 0.66 | 0.973901 |
Target: 5'- ---aGAgu-CcGGCGAGACCGUCGCGg -3' miRNA: 3'- gccaCUaguGcCCGCUUUGGCAGUGC- -5' |
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10988 | 5' | -54.2 | NC_002794.1 | + | 156506 | 0.66 | 0.973641 |
Target: 5'- gCGGcccguUGAUCGCGaguccgcGGUGAGgguuCCGUCGCGu -3' miRNA: 3'- -GCC-----ACUAGUGC-------CCGCUUu---GGCAGUGC- -5' |
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10988 | 5' | -54.2 | NC_002794.1 | + | 156014 | 0.73 | 0.773076 |
Target: 5'- aCGGgGGucUCAUGGGuCGcAGCCGUCGCGu -3' miRNA: 3'- -GCCaCU--AGUGCCC-GCuUUGGCAGUGC- -5' |
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10988 | 5' | -54.2 | NC_002794.1 | + | 151043 | 0.67 | 0.958472 |
Target: 5'- --cUGAUgACGGGCGAGugCacggccgcgcagGUCGCGg -3' miRNA: 3'- gccACUAgUGCCCGCUUugG------------CAGUGC- -5' |
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10988 | 5' | -54.2 | NC_002794.1 | + | 148125 | 0.66 | 0.978723 |
Target: 5'- uCGGUGucgggCGCggggccgccgGGGCGAgGGCgGUCGCGa -3' miRNA: 3'- -GCCACua---GUG----------CCCGCU-UUGgCAGUGC- -5' |
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10988 | 5' | -54.2 | NC_002794.1 | + | 147837 | 0.69 | 0.929885 |
Target: 5'- cCGGUGGUCGagccguugugcauccUGGGCG---UCGUCGCGc -3' miRNA: 3'- -GCCACUAGU---------------GCCCGCuuuGGCAGUGC- -5' |
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10988 | 5' | -54.2 | NC_002794.1 | + | 145049 | 0.71 | 0.86415 |
Target: 5'- aGGUGGUcaacuucaccgagCugGcGGCGggGCCGgacagCACGg -3' miRNA: 3'- gCCACUA-------------GugC-CCGCuuUGGCa----GUGC- -5' |
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10988 | 5' | -54.2 | NC_002794.1 | + | 144299 | 0.69 | 0.916471 |
Target: 5'- cCGGUGGaCgaggaggACGGGCcGAGCUGUUACGa -3' miRNA: 3'- -GCCACUaG-------UGCCCGcUUUGGCAGUGC- -5' |
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10988 | 5' | -54.2 | NC_002794.1 | + | 141582 | 0.67 | 0.972311 |
Target: 5'- -cGUGAUCAugacgcccgcgucgcCGGGCGGcucggcGACCGgcUCGCGg -3' miRNA: 3'- gcCACUAGU---------------GCCCGCU------UUGGC--AGUGC- -5' |
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10988 | 5' | -54.2 | NC_002794.1 | + | 140128 | 0.68 | 0.937717 |
Target: 5'- aCGGUGG--GCGGGUggggaacgacGAGGCgGUCGCGc -3' miRNA: 3'- -GCCACUagUGCCCG----------CUUUGgCAGUGC- -5' |
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10988 | 5' | -54.2 | NC_002794.1 | + | 139893 | 0.69 | 0.905322 |
Target: 5'- uCGGUGAU-GCGGGCcagccgcAGGCCGUCggACGg -3' miRNA: 3'- -GCCACUAgUGCCCGc------UUUGGCAG--UGC- -5' |
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10988 | 5' | -54.2 | NC_002794.1 | + | 139109 | 0.66 | 0.980663 |
Target: 5'- uGGgcacGA-CGCGGGCGAucacggaGACggCGUCGCGg -3' miRNA: 3'- gCCa---CUaGUGCCCGCU-------UUG--GCAGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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