miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10988 5' -54.2 NC_002794.1 + 189843 0.7 0.879221
Target:  5'- gCGG-GGUCuCGGccGCGGAGCCGUCgGCGu -3'
miRNA:   3'- -GCCaCUAGuGCC--CGCUUUGGCAG-UGC- -5'
10988 5' -54.2 NC_002794.1 + 183592 0.72 0.800013
Target:  5'- aCGGUGGggGCGGaGgGggGCCGcgCGCGg -3'
miRNA:   3'- -GCCACUagUGCC-CgCuuUGGCa-GUGC- -5'
10988 5' -54.2 NC_002794.1 + 182573 0.72 0.817258
Target:  5'- cCGG-GAUCuccguGCGGGCGAcGAUgGUCGCGu -3'
miRNA:   3'- -GCCaCUAG-----UGCCCGCU-UUGgCAGUGC- -5'
10988 5' -54.2 NC_002794.1 + 181368 0.76 0.616701
Target:  5'- cCGGUugagGGUCACGGGCccGGCCGUCAg- -3'
miRNA:   3'- -GCCA----CUAGUGCCCGcuUUGGCAGUgc -5'
10988 5' -54.2 NC_002794.1 + 179991 0.66 0.98087
Target:  5'- gCGGUGGcCGCGacGGCGGGcCCGgcCACGa -3'
miRNA:   3'- -GCCACUaGUGC--CCGCUUuGGCa-GUGC- -5'
10988 5' -54.2 NC_002794.1 + 178342 0.67 0.970934
Target:  5'- uGGUGAcCGCGuGGCGAcgauguACCGgugaggaggacgcUCACGa -3'
miRNA:   3'- gCCACUaGUGC-CCGCUu-----UGGC-------------AGUGC- -5'
10988 5' -54.2 NC_002794.1 + 177718 0.66 0.98087
Target:  5'- aCGGcGGUcCACgGGGCGGauccGACCGacUCGCGc -3'
miRNA:   3'- -GCCaCUA-GUG-CCCGCU----UUGGC--AGUGC- -5'
10988 5' -54.2 NC_002794.1 + 160741 0.68 0.942316
Target:  5'- uGGUGGU--UGGGCGAGAgCGUgACu -3'
miRNA:   3'- gCCACUAguGCCCGCUUUgGCAgUGc -5'
10988 5' -54.2 NC_002794.1 + 157047 0.66 0.973901
Target:  5'- ---aGAgu-CcGGCGAGACCGUCGCGg -3'
miRNA:   3'- gccaCUaguGcCCGCUUUGGCAGUGC- -5'
10988 5' -54.2 NC_002794.1 + 156506 0.66 0.973641
Target:  5'- gCGGcccguUGAUCGCGaguccgcGGUGAGgguuCCGUCGCGu -3'
miRNA:   3'- -GCC-----ACUAGUGC-------CCGCUUu---GGCAGUGC- -5'
10988 5' -54.2 NC_002794.1 + 156014 0.73 0.773076
Target:  5'- aCGGgGGucUCAUGGGuCGcAGCCGUCGCGu -3'
miRNA:   3'- -GCCaCU--AGUGCCC-GCuUUGGCAGUGC- -5'
10988 5' -54.2 NC_002794.1 + 151043 0.67 0.958472
Target:  5'- --cUGAUgACGGGCGAGugCacggccgcgcagGUCGCGg -3'
miRNA:   3'- gccACUAgUGCCCGCUUugG------------CAGUGC- -5'
10988 5' -54.2 NC_002794.1 + 148125 0.66 0.978723
Target:  5'- uCGGUGucgggCGCggggccgccgGGGCGAgGGCgGUCGCGa -3'
miRNA:   3'- -GCCACua---GUG----------CCCGCU-UUGgCAGUGC- -5'
10988 5' -54.2 NC_002794.1 + 147837 0.69 0.929885
Target:  5'- cCGGUGGUCGagccguugugcauccUGGGCG---UCGUCGCGc -3'
miRNA:   3'- -GCCACUAGU---------------GCCCGCuuuGGCAGUGC- -5'
10988 5' -54.2 NC_002794.1 + 145049 0.71 0.86415
Target:  5'- aGGUGGUcaacuucaccgagCugGcGGCGggGCCGgacagCACGg -3'
miRNA:   3'- gCCACUA-------------GugC-CCGCuuUGGCa----GUGC- -5'
10988 5' -54.2 NC_002794.1 + 144299 0.69 0.916471
Target:  5'- cCGGUGGaCgaggaggACGGGCcGAGCUGUUACGa -3'
miRNA:   3'- -GCCACUaG-------UGCCCGcUUUGGCAGUGC- -5'
10988 5' -54.2 NC_002794.1 + 141582 0.67 0.972311
Target:  5'- -cGUGAUCAugacgcccgcgucgcCGGGCGGcucggcGACCGgcUCGCGg -3'
miRNA:   3'- gcCACUAGU---------------GCCCGCU------UUGGC--AGUGC- -5'
10988 5' -54.2 NC_002794.1 + 140128 0.68 0.937717
Target:  5'- aCGGUGG--GCGGGUggggaacgacGAGGCgGUCGCGc -3'
miRNA:   3'- -GCCACUagUGCCCG----------CUUUGgCAGUGC- -5'
10988 5' -54.2 NC_002794.1 + 139893 0.69 0.905322
Target:  5'- uCGGUGAU-GCGGGCcagccgcAGGCCGUCggACGg -3'
miRNA:   3'- -GCCACUAgUGCCCGc------UUUGGCAG--UGC- -5'
10988 5' -54.2 NC_002794.1 + 139109 0.66 0.980663
Target:  5'- uGGgcacGA-CGCGGGCGAucacggaGACggCGUCGCGg -3'
miRNA:   3'- gCCa---CUaGUGCCCGCU-------UUG--GCAGUGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.