miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10992 3' -51.2 NC_002794.1 + 157977 0.66 0.997668
Target:  5'- gCACGGAGAagcgcucauuUGAC-CGGAGccGGuGGGg -3'
miRNA:   3'- aGUGCCUCU----------AUUGcGCCUUuuCC-CCU- -5'
10992 3' -51.2 NC_002794.1 + 109055 0.66 0.997668
Target:  5'- ---gGGAGAccugUGCGGAccagGAAGGGGGg -3'
miRNA:   3'- agugCCUCUauu-GCGCCU----UUUCCCCU- -5'
10992 3' -51.2 NC_002794.1 + 120066 0.66 0.997668
Target:  5'- cCGCGGAGGccGACGCGGcgguGGcGGc -3'
miRNA:   3'- aGUGCCUCUa-UUGCGCCuuuuCC-CCu -5'
10992 3' -51.2 NC_002794.1 + 136872 0.66 0.996751
Target:  5'- uUCugGGcccGGAUcugGACGUGGAGcAGGGa- -3'
miRNA:   3'- -AGugCC---UCUA---UUGCGCCUUuUCCCcu -5'
10992 3' -51.2 NC_002794.1 + 115884 0.66 0.996751
Target:  5'- gUC-CGGGGcgucCGCGGAGcgcGGGGGGu -3'
miRNA:   3'- -AGuGCCUCuauuGCGCCUUu--UCCCCU- -5'
10992 3' -51.2 NC_002794.1 + 177533 0.66 0.996192
Target:  5'- aCAaGGAGGggUGGCGCGGAacggaauaaAAAGGGa- -3'
miRNA:   3'- aGUgCCUCU--AUUGCGCCU---------UUUCCCcu -5'
10992 3' -51.2 NC_002794.1 + 95802 0.66 0.995487
Target:  5'- -gGCGGAGG-AAC-CGGggGagcggcggcggccGGGGGAg -3'
miRNA:   3'- agUGCCUCUaUUGcGCCuuU-------------UCCCCU- -5'
10992 3' -51.2 NC_002794.1 + 146746 0.66 0.994835
Target:  5'- -gACGGGc----CGCGGAucGGGGGAg -3'
miRNA:   3'- agUGCCUcuauuGCGCCUuuUCCCCU- -5'
10992 3' -51.2 NC_002794.1 + 107547 0.67 0.994023
Target:  5'- -gGCGGcGAcGAcCGCGGu--GGGGGAg -3'
miRNA:   3'- agUGCCuCUaUU-GCGCCuuuUCCCCU- -5'
10992 3' -51.2 NC_002794.1 + 135635 0.67 0.994023
Target:  5'- aCGuCGGcGAacaacAGCGCGGAGGguGGGGGGg -3'
miRNA:   3'- aGU-GCCuCUa----UUGCGCCUUU--UCCCCU- -5'
10992 3' -51.2 NC_002794.1 + 185471 0.67 0.993111
Target:  5'- cCGCGGGcGGcGGcCGCGGc-GAGGGGAc -3'
miRNA:   3'- aGUGCCU-CUaUU-GCGCCuuUUCCCCU- -5'
10992 3' -51.2 NC_002794.1 + 108365 0.67 0.992091
Target:  5'- -aGCGGAGGaggaccgGGCGcCGGAGc-GGGGAg -3'
miRNA:   3'- agUGCCUCUa------UUGC-GCCUUuuCCCCU- -5'
10992 3' -51.2 NC_002794.1 + 98926 0.68 0.988299
Target:  5'- -aGCGGGcugGGCGCGGccgGGAAGGGGc -3'
miRNA:   3'- agUGCCUcuaUUGCGCC---UUUUCCCCu -5'
10992 3' -51.2 NC_002794.1 + 156580 0.68 0.988299
Target:  5'- -aGCGGAGAUGGC-CGaccuGGGGGGu -3'
miRNA:   3'- agUGCCUCUAUUGcGCcuuuUCCCCU- -5'
10992 3' -51.2 NC_002794.1 + 90017 0.68 0.988299
Target:  5'- -gACGGAGAUcGACGUGGAGuuGAGucGGAc -3'
miRNA:   3'- agUGCCUCUA-UUGCGCCUU--UUCc-CCU- -5'
10992 3' -51.2 NC_002794.1 + 142704 0.68 0.985075
Target:  5'- -gGCGGAGAUcaaaaGugGUGGu--GGGGGu -3'
miRNA:   3'- agUGCCUCUA-----UugCGCCuuuUCCCCu -5'
10992 3' -51.2 NC_002794.1 + 181060 0.68 0.985075
Target:  5'- gUCuCGGAGA--ACGCGGGuccgggcAGGGGc -3'
miRNA:   3'- -AGuGCCUCUauUGCGCCUuu-----UCCCCu -5'
10992 3' -51.2 NC_002794.1 + 34876 0.68 0.985075
Target:  5'- cCGCGGAcgccGcgAACGCGGAAccaGGGAu -3'
miRNA:   3'- aGUGCCU----CuaUUGCGCCUUuucCCCU- -5'
10992 3' -51.2 NC_002794.1 + 2998 0.69 0.979026
Target:  5'- gUCACGGGGcgGGgGgauucUGaGAAAAGGGGAa -3'
miRNA:   3'- -AGUGCCUCuaUUgC-----GC-CUUUUCCCCU- -5'
10992 3' -51.2 NC_002794.1 + 142353 0.69 0.979026
Target:  5'- -gGCGGAGGcggcgGAgGCGGcgGAGGcGGAg -3'
miRNA:   3'- agUGCCUCUa----UUgCGCCuuUUCC-CCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.