Results 21 - 40 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10992 | 3' | -51.2 | NC_002794.1 | + | 129868 | 0.69 | 0.977624 |
Target: 5'- -aACGGGGGgcgcacgagaagugGACGCGGGAGAGcgaacggcgcuGGGAg -3' miRNA: 3'- agUGCCUCUa-------------UUGCGCCUUUUC-----------CCCU- -5' |
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10992 | 3' | -51.2 | NC_002794.1 | + | 126691 | 0.69 | 0.976653 |
Target: 5'- aUCGgGGAGGgaggggcgcCGCGGAcucggggcGAGGGGGGu -3' miRNA: 3'- -AGUgCCUCUauu------GCGCCU--------UUUCCCCU- -5' |
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10992 | 3' | -51.2 | NC_002794.1 | + | 42588 | 0.69 | 0.971325 |
Target: 5'- -gACGGAGGagGGCGCGGcgGccGGGAg -3' miRNA: 3'- agUGCCUCUa-UUGCGCCuuUucCCCU- -5' |
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10992 | 3' | -51.2 | NC_002794.1 | + | 48434 | 0.69 | 0.971325 |
Target: 5'- -gGCGGAGGUGGCGgCGGccAucGGGAc -3' miRNA: 3'- agUGCCUCUAUUGC-GCCuuUucCCCU- -5' |
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10992 | 3' | -51.2 | NC_002794.1 | + | 143634 | 0.69 | 0.968356 |
Target: 5'- uUCugGuAGAUGGCGgGGAAGAGcGuGGAc -3' miRNA: 3'- -AGugCcUCUAUUGCgCCUUUUC-C-CCU- -5' |
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10992 | 3' | -51.2 | NC_002794.1 | + | 191878 | 0.69 | 0.968356 |
Target: 5'- -gGCGGAGggGGCgGCGGA--GGcGGGAu -3' miRNA: 3'- agUGCCUCuaUUG-CGCCUuuUC-CCCU- -5' |
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10992 | 3' | -51.2 | NC_002794.1 | + | 145492 | 0.7 | 0.965175 |
Target: 5'- aUCGCGaGGAUGAgGCGuGcGAAGGGGu -3' miRNA: 3'- -AGUGCcUCUAUUgCGC-CuUUUCCCCu -5' |
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10992 | 3' | -51.2 | NC_002794.1 | + | 148174 | 0.7 | 0.965175 |
Target: 5'- ---aGGGGGUcGCGaCGGAAGgAGGGGGg -3' miRNA: 3'- agugCCUCUAuUGC-GCCUUU-UCCCCU- -5' |
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10992 | 3' | -51.2 | NC_002794.1 | + | 107876 | 0.7 | 0.965175 |
Target: 5'- aUCGCGGAGGcGGCGCGGc---GGGu- -3' miRNA: 3'- -AGUGCCUCUaUUGCGCCuuuuCCCcu -5' |
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10992 | 3' | -51.2 | NC_002794.1 | + | 140229 | 0.7 | 0.965175 |
Target: 5'- ---aGGAGAgagagagagAGCGgGGAaaGAAGGGGAa -3' miRNA: 3'- agugCCUCUa--------UUGCgCCU--UUUCCCCU- -5' |
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10992 | 3' | -51.2 | NC_002794.1 | + | 108339 | 0.7 | 0.950219 |
Target: 5'- gCGCaGGAGGagGugGCGGAGc-GGGGAg -3' miRNA: 3'- aGUG-CCUCUa-UugCGCCUUuuCCCCU- -5' |
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10992 | 3' | -51.2 | NC_002794.1 | + | 92306 | 0.71 | 0.945899 |
Target: 5'- -gGCGGGGcugGGCGCGGGcgGcGGGGGc -3' miRNA: 3'- agUGCCUCua-UUGCGCCUuuU-CCCCU- -5' |
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10992 | 3' | -51.2 | NC_002794.1 | + | 126748 | 0.71 | 0.936539 |
Target: 5'- -gACGGuGGUggUGuCGGGAAcguGGGGGAa -3' miRNA: 3'- agUGCCuCUAuuGC-GCCUUU---UCCCCU- -5' |
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10992 | 3' | -51.2 | NC_002794.1 | + | 7808 | 0.71 | 0.926207 |
Target: 5'- aCuCGGAugagGAUGA-GCGGGAGGGGGGGc -3' miRNA: 3'- aGuGCCU----CUAUUgCGCCUUUUCCCCU- -5' |
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10992 | 3' | -51.2 | NC_002794.1 | + | 124160 | 0.72 | 0.920675 |
Target: 5'- cCGCGGGGcccgggagAGCGUcGggGAGGGGAc -3' miRNA: 3'- aGUGCCUCua------UUGCGcCuuUUCCCCU- -5' |
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10992 | 3' | -51.2 | NC_002794.1 | + | 116006 | 0.72 | 0.913713 |
Target: 5'- cCGCGGAGAccgcgguggcgauUGGCGCGGGgaccgGAgaggagagcgcagGGGGGAg -3' miRNA: 3'- aGUGCCUCU-------------AUUGCGCCU-----UU-------------UCCCCU- -5' |
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10992 | 3' | -51.2 | NC_002794.1 | + | 125719 | 0.75 | 0.782893 |
Target: 5'- -aGCGGAGcgAACG-GGAGGAGGcGGAg -3' miRNA: 3'- agUGCCUCuaUUGCgCCUUUUCC-CCU- -5' |
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10992 | 3' | -51.2 | NC_002794.1 | + | 118981 | 0.76 | 0.754328 |
Target: 5'- -gGCGGAGcacguccgGGCGCGGGgagacGAGGGGGAa -3' miRNA: 3'- agUGCCUCua------UUGCGCCU-----UUUCCCCU- -5' |
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10992 | 3' | -51.2 | NC_002794.1 | + | 107601 | 0.78 | 0.622361 |
Target: 5'- -gGCGGGGGaGACGgGGAAGAcGGGGAc -3' miRNA: 3'- agUGCCUCUaUUGCgCCUUUU-CCCCU- -5' |
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10992 | 3' | -51.2 | NC_002794.1 | + | 155749 | 0.84 | 0.357899 |
Target: 5'- aCGCGcGAGAUGuugGCGGGAGAGGGGAu -3' miRNA: 3'- aGUGC-CUCUAUug-CGCCUUUUCCCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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