miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10992 3' -51.2 NC_002794.1 + 2998 0.69 0.979026
Target:  5'- gUCACGGGGcgGGgGgauucUGaGAAAAGGGGAa -3'
miRNA:   3'- -AGUGCCUCuaUUgC-----GC-CUUUUCCCCU- -5'
10992 3' -51.2 NC_002794.1 + 7808 0.71 0.926207
Target:  5'- aCuCGGAugagGAUGA-GCGGGAGGGGGGGc -3'
miRNA:   3'- aGuGCCU----CUAUUgCGCCUUUUCCCCU- -5'
10992 3' -51.2 NC_002794.1 + 34876 0.68 0.985075
Target:  5'- cCGCGGAcgccGcgAACGCGGAAccaGGGAu -3'
miRNA:   3'- aGUGCCU----CuaUUGCGCCUUuucCCCU- -5'
10992 3' -51.2 NC_002794.1 + 42588 0.69 0.971325
Target:  5'- -gACGGAGGagGGCGCGGcgGccGGGAg -3'
miRNA:   3'- agUGCCUCUa-UUGCGCCuuUucCCCU- -5'
10992 3' -51.2 NC_002794.1 + 48434 0.69 0.971325
Target:  5'- -gGCGGAGGUGGCGgCGGccAucGGGAc -3'
miRNA:   3'- agUGCCUCUAUUGC-GCCuuUucCCCU- -5'
10992 3' -51.2 NC_002794.1 + 90017 0.68 0.988299
Target:  5'- -gACGGAGAUcGACGUGGAGuuGAGucGGAc -3'
miRNA:   3'- agUGCCUCUA-UUGCGCCUU--UUCc-CCU- -5'
10992 3' -51.2 NC_002794.1 + 92306 0.71 0.945899
Target:  5'- -gGCGGGGcugGGCGCGGGcgGcGGGGGc -3'
miRNA:   3'- agUGCCUCua-UUGCGCCUuuU-CCCCU- -5'
10992 3' -51.2 NC_002794.1 + 95802 0.66 0.995487
Target:  5'- -gGCGGAGG-AAC-CGGggGagcggcggcggccGGGGGAg -3'
miRNA:   3'- agUGCCUCUaUUGcGCCuuU-------------UCCCCU- -5'
10992 3' -51.2 NC_002794.1 + 98926 0.68 0.988299
Target:  5'- -aGCGGGcugGGCGCGGccgGGAAGGGGc -3'
miRNA:   3'- agUGCCUcuaUUGCGCC---UUUUCCCCu -5'
10992 3' -51.2 NC_002794.1 + 107547 0.67 0.994023
Target:  5'- -gGCGGcGAcGAcCGCGGu--GGGGGAg -3'
miRNA:   3'- agUGCCuCUaUU-GCGCCuuuUCCCCU- -5'
10992 3' -51.2 NC_002794.1 + 107601 0.78 0.622361
Target:  5'- -gGCGGGGGaGACGgGGAAGAcGGGGAc -3'
miRNA:   3'- agUGCCUCUaUUGCgCCUUUU-CCCCU- -5'
10992 3' -51.2 NC_002794.1 + 107876 0.7 0.965175
Target:  5'- aUCGCGGAGGcGGCGCGGc---GGGu- -3'
miRNA:   3'- -AGUGCCUCUaUUGCGCCuuuuCCCcu -5'
10992 3' -51.2 NC_002794.1 + 108339 0.7 0.950219
Target:  5'- gCGCaGGAGGagGugGCGGAGc-GGGGAg -3'
miRNA:   3'- aGUG-CCUCUa-UugCGCCUUuuCCCCU- -5'
10992 3' -51.2 NC_002794.1 + 108365 0.67 0.992091
Target:  5'- -aGCGGAGGaggaccgGGCGcCGGAGc-GGGGAg -3'
miRNA:   3'- agUGCCUCUa------UUGC-GCCUUuuCCCCU- -5'
10992 3' -51.2 NC_002794.1 + 109055 0.66 0.997668
Target:  5'- ---gGGAGAccugUGCGGAccagGAAGGGGGg -3'
miRNA:   3'- agugCCUCUauu-GCGCCU----UUUCCCCU- -5'
10992 3' -51.2 NC_002794.1 + 115884 0.66 0.996751
Target:  5'- gUC-CGGGGcgucCGCGGAGcgcGGGGGGu -3'
miRNA:   3'- -AGuGCCUCuauuGCGCCUUu--UCCCCU- -5'
10992 3' -51.2 NC_002794.1 + 116006 0.72 0.913713
Target:  5'- cCGCGGAGAccgcgguggcgauUGGCGCGGGgaccgGAgaggagagcgcagGGGGGAg -3'
miRNA:   3'- aGUGCCUCU-------------AUUGCGCCU-----UU-------------UCCCCU- -5'
10992 3' -51.2 NC_002794.1 + 118981 0.76 0.754328
Target:  5'- -gGCGGAGcacguccgGGCGCGGGgagacGAGGGGGAa -3'
miRNA:   3'- agUGCCUCua------UUGCGCCU-----UUUCCCCU- -5'
10992 3' -51.2 NC_002794.1 + 120066 0.66 0.997668
Target:  5'- cCGCGGAGGccGACGCGGcgguGGcGGc -3'
miRNA:   3'- aGUGCCUCUa-UUGCGCCuuuuCC-CCu -5'
10992 3' -51.2 NC_002794.1 + 124160 0.72 0.920675
Target:  5'- cCGCGGGGcccgggagAGCGUcGggGAGGGGAc -3'
miRNA:   3'- aGUGCCUCua------UUGCGcCuuUUCCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.