Results 21 - 40 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10992 | 3' | -51.2 | NC_002794.1 | + | 125719 | 0.75 | 0.782893 |
Target: 5'- -aGCGGAGcgAACG-GGAGGAGGcGGAg -3' miRNA: 3'- agUGCCUCuaUUGCgCCUUUUCC-CCU- -5' |
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10992 | 3' | -51.2 | NC_002794.1 | + | 126691 | 0.69 | 0.976653 |
Target: 5'- aUCGgGGAGGgaggggcgcCGCGGAcucggggcGAGGGGGGu -3' miRNA: 3'- -AGUgCCUCUauu------GCGCCU--------UUUCCCCU- -5' |
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10992 | 3' | -51.2 | NC_002794.1 | + | 126748 | 0.71 | 0.936539 |
Target: 5'- -gACGGuGGUggUGuCGGGAAcguGGGGGAa -3' miRNA: 3'- agUGCCuCUAuuGC-GCCUUU---UCCCCU- -5' |
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10992 | 3' | -51.2 | NC_002794.1 | + | 129868 | 0.69 | 0.977624 |
Target: 5'- -aACGGGGGgcgcacgagaagugGACGCGGGAGAGcgaacggcgcuGGGAg -3' miRNA: 3'- agUGCCUCUa-------------UUGCGCCUUUUC-----------CCCU- -5' |
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10992 | 3' | -51.2 | NC_002794.1 | + | 135635 | 0.67 | 0.994023 |
Target: 5'- aCGuCGGcGAacaacAGCGCGGAGGguGGGGGGg -3' miRNA: 3'- aGU-GCCuCUa----UUGCGCCUUU--UCCCCU- -5' |
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10992 | 3' | -51.2 | NC_002794.1 | + | 136872 | 0.66 | 0.996751 |
Target: 5'- uUCugGGcccGGAUcugGACGUGGAGcAGGGa- -3' miRNA: 3'- -AGugCC---UCUA---UUGCGCCUUuUCCCcu -5' |
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10992 | 3' | -51.2 | NC_002794.1 | + | 140229 | 0.7 | 0.965175 |
Target: 5'- ---aGGAGAgagagagagAGCGgGGAaaGAAGGGGAa -3' miRNA: 3'- agugCCUCUa--------UUGCgCCU--UUUCCCCU- -5' |
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10992 | 3' | -51.2 | NC_002794.1 | + | 142353 | 0.69 | 0.979026 |
Target: 5'- -gGCGGAGGcggcgGAgGCGGcgGAGGcGGAg -3' miRNA: 3'- agUGCCUCUa----UUgCGCCuuUUCC-CCU- -5' |
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10992 | 3' | -51.2 | NC_002794.1 | + | 142704 | 0.68 | 0.985075 |
Target: 5'- -gGCGGAGAUcaaaaGugGUGGu--GGGGGu -3' miRNA: 3'- agUGCCUCUA-----UugCGCCuuuUCCCCu -5' |
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10992 | 3' | -51.2 | NC_002794.1 | + | 143634 | 0.69 | 0.968356 |
Target: 5'- uUCugGuAGAUGGCGgGGAAGAGcGuGGAc -3' miRNA: 3'- -AGugCcUCUAUUGCgCCUUUUC-C-CCU- -5' |
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10992 | 3' | -51.2 | NC_002794.1 | + | 145492 | 0.7 | 0.965175 |
Target: 5'- aUCGCGaGGAUGAgGCGuGcGAAGGGGu -3' miRNA: 3'- -AGUGCcUCUAUUgCGC-CuUUUCCCCu -5' |
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10992 | 3' | -51.2 | NC_002794.1 | + | 146746 | 0.66 | 0.994835 |
Target: 5'- -gACGGGc----CGCGGAucGGGGGAg -3' miRNA: 3'- agUGCCUcuauuGCGCCUuuUCCCCU- -5' |
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10992 | 3' | -51.2 | NC_002794.1 | + | 148174 | 0.7 | 0.965175 |
Target: 5'- ---aGGGGGUcGCGaCGGAAGgAGGGGGg -3' miRNA: 3'- agugCCUCUAuUGC-GCCUUU-UCCCCU- -5' |
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10992 | 3' | -51.2 | NC_002794.1 | + | 155749 | 0.84 | 0.357899 |
Target: 5'- aCGCGcGAGAUGuugGCGGGAGAGGGGAu -3' miRNA: 3'- aGUGC-CUCUAUug-CGCCUUUUCCCCU- -5' |
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10992 | 3' | -51.2 | NC_002794.1 | + | 156580 | 0.68 | 0.988299 |
Target: 5'- -aGCGGAGAUGGC-CGaccuGGGGGGu -3' miRNA: 3'- agUGCCUCUAUUGcGCcuuuUCCCCU- -5' |
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10992 | 3' | -51.2 | NC_002794.1 | + | 157977 | 0.66 | 0.997668 |
Target: 5'- gCACGGAGAagcgcucauuUGAC-CGGAGccGGuGGGg -3' miRNA: 3'- aGUGCCUCU----------AUUGcGCCUUuuCC-CCU- -5' |
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10992 | 3' | -51.2 | NC_002794.1 | + | 177533 | 0.66 | 0.996192 |
Target: 5'- aCAaGGAGGggUGGCGCGGAacggaauaaAAAGGGa- -3' miRNA: 3'- aGUgCCUCU--AUUGCGCCU---------UUUCCCcu -5' |
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10992 | 3' | -51.2 | NC_002794.1 | + | 181060 | 0.68 | 0.985075 |
Target: 5'- gUCuCGGAGA--ACGCGGGuccgggcAGGGGc -3' miRNA: 3'- -AGuGCCUCUauUGCGCCUuu-----UCCCCu -5' |
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10992 | 3' | -51.2 | NC_002794.1 | + | 185471 | 0.67 | 0.993111 |
Target: 5'- cCGCGGGcGGcGGcCGCGGc-GAGGGGAc -3' miRNA: 3'- aGUGCCU-CUaUU-GCGCCuuUUCCCCU- -5' |
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10992 | 3' | -51.2 | NC_002794.1 | + | 191878 | 0.69 | 0.968356 |
Target: 5'- -gGCGGAGggGGCgGCGGA--GGcGGGAu -3' miRNA: 3'- agUGCCUCuaUUG-CGCCUuuUC-CCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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