miRNA display CGI


Results 1 - 20 of 40 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10992 3' -51.2 NC_002794.1 + 191878 0.69 0.968356
Target:  5'- -gGCGGAGggGGCgGCGGA--GGcGGGAu -3'
miRNA:   3'- agUGCCUCuaUUG-CGCCUuuUC-CCCU- -5'
10992 3' -51.2 NC_002794.1 + 185471 0.67 0.993111
Target:  5'- cCGCGGGcGGcGGcCGCGGc-GAGGGGAc -3'
miRNA:   3'- aGUGCCU-CUaUU-GCGCCuuUUCCCCU- -5'
10992 3' -51.2 NC_002794.1 + 181060 0.68 0.985075
Target:  5'- gUCuCGGAGA--ACGCGGGuccgggcAGGGGc -3'
miRNA:   3'- -AGuGCCUCUauUGCGCCUuu-----UCCCCu -5'
10992 3' -51.2 NC_002794.1 + 177533 0.66 0.996192
Target:  5'- aCAaGGAGGggUGGCGCGGAacggaauaaAAAGGGa- -3'
miRNA:   3'- aGUgCCUCU--AUUGCGCCU---------UUUCCCcu -5'
10992 3' -51.2 NC_002794.1 + 157977 0.66 0.997668
Target:  5'- gCACGGAGAagcgcucauuUGAC-CGGAGccGGuGGGg -3'
miRNA:   3'- aGUGCCUCU----------AUUGcGCCUUuuCC-CCU- -5'
10992 3' -51.2 NC_002794.1 + 156580 0.68 0.988299
Target:  5'- -aGCGGAGAUGGC-CGaccuGGGGGGu -3'
miRNA:   3'- agUGCCUCUAUUGcGCcuuuUCCCCU- -5'
10992 3' -51.2 NC_002794.1 + 155749 0.84 0.357899
Target:  5'- aCGCGcGAGAUGuugGCGGGAGAGGGGAu -3'
miRNA:   3'- aGUGC-CUCUAUug-CGCCUUUUCCCCU- -5'
10992 3' -51.2 NC_002794.1 + 148174 0.7 0.965175
Target:  5'- ---aGGGGGUcGCGaCGGAAGgAGGGGGg -3'
miRNA:   3'- agugCCUCUAuUGC-GCCUUU-UCCCCU- -5'
10992 3' -51.2 NC_002794.1 + 146746 0.66 0.994835
Target:  5'- -gACGGGc----CGCGGAucGGGGGAg -3'
miRNA:   3'- agUGCCUcuauuGCGCCUuuUCCCCU- -5'
10992 3' -51.2 NC_002794.1 + 145492 0.7 0.965175
Target:  5'- aUCGCGaGGAUGAgGCGuGcGAAGGGGu -3'
miRNA:   3'- -AGUGCcUCUAUUgCGC-CuUUUCCCCu -5'
10992 3' -51.2 NC_002794.1 + 143634 0.69 0.968356
Target:  5'- uUCugGuAGAUGGCGgGGAAGAGcGuGGAc -3'
miRNA:   3'- -AGugCcUCUAUUGCgCCUUUUC-C-CCU- -5'
10992 3' -51.2 NC_002794.1 + 142704 0.68 0.985075
Target:  5'- -gGCGGAGAUcaaaaGugGUGGu--GGGGGu -3'
miRNA:   3'- agUGCCUCUA-----UugCGCCuuuUCCCCu -5'
10992 3' -51.2 NC_002794.1 + 142353 0.69 0.979026
Target:  5'- -gGCGGAGGcggcgGAgGCGGcgGAGGcGGAg -3'
miRNA:   3'- agUGCCUCUa----UUgCGCCuuUUCC-CCU- -5'
10992 3' -51.2 NC_002794.1 + 140229 0.7 0.965175
Target:  5'- ---aGGAGAgagagagagAGCGgGGAaaGAAGGGGAa -3'
miRNA:   3'- agugCCUCUa--------UUGCgCCU--UUUCCCCU- -5'
10992 3' -51.2 NC_002794.1 + 136872 0.66 0.996751
Target:  5'- uUCugGGcccGGAUcugGACGUGGAGcAGGGa- -3'
miRNA:   3'- -AGugCC---UCUA---UUGCGCCUUuUCCCcu -5'
10992 3' -51.2 NC_002794.1 + 135635 0.67 0.994023
Target:  5'- aCGuCGGcGAacaacAGCGCGGAGGguGGGGGGg -3'
miRNA:   3'- aGU-GCCuCUa----UUGCGCCUUU--UCCCCU- -5'
10992 3' -51.2 NC_002794.1 + 129868 0.69 0.977624
Target:  5'- -aACGGGGGgcgcacgagaagugGACGCGGGAGAGcgaacggcgcuGGGAg -3'
miRNA:   3'- agUGCCUCUa-------------UUGCGCCUUUUC-----------CCCU- -5'
10992 3' -51.2 NC_002794.1 + 126748 0.71 0.936539
Target:  5'- -gACGGuGGUggUGuCGGGAAcguGGGGGAa -3'
miRNA:   3'- agUGCCuCUAuuGC-GCCUUU---UCCCCU- -5'
10992 3' -51.2 NC_002794.1 + 126691 0.69 0.976653
Target:  5'- aUCGgGGAGGgaggggcgcCGCGGAcucggggcGAGGGGGGu -3'
miRNA:   3'- -AGUgCCUCUauu------GCGCCU--------UUUCCCCU- -5'
10992 3' -51.2 NC_002794.1 + 125719 0.75 0.782893
Target:  5'- -aGCGGAGcgAACG-GGAGGAGGcGGAg -3'
miRNA:   3'- agUGCCUCuaUUGCgCCUUUUCC-CCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.