Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10992 | 3' | -51.2 | NC_002794.1 | + | 155749 | 0.84 | 0.357899 |
Target: 5'- aCGCGcGAGAUGuugGCGGGAGAGGGGAu -3' miRNA: 3'- aGUGC-CUCUAUug-CGCCUUUUCCCCU- -5' |
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10992 | 3' | -51.2 | NC_002794.1 | + | 98926 | 0.68 | 0.988299 |
Target: 5'- -aGCGGGcugGGCGCGGccgGGAAGGGGc -3' miRNA: 3'- agUGCCUcuaUUGCGCC---UUUUCCCCu -5' |
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10992 | 3' | -51.2 | NC_002794.1 | + | 156580 | 0.68 | 0.988299 |
Target: 5'- -aGCGGAGAUGGC-CGaccuGGGGGGu -3' miRNA: 3'- agUGCCUCUAUUGcGCcuuuUCCCCU- -5' |
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10992 | 3' | -51.2 | NC_002794.1 | + | 90017 | 0.68 | 0.988299 |
Target: 5'- -gACGGAGAUcGACGUGGAGuuGAGucGGAc -3' miRNA: 3'- agUGCCUCUA-UUGCGCCUU--UUCc-CCU- -5' |
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10992 | 3' | -51.2 | NC_002794.1 | + | 34876 | 0.68 | 0.985075 |
Target: 5'- cCGCGGAcgccGcgAACGCGGAAccaGGGAu -3' miRNA: 3'- aGUGCCU----CuaUUGCGCCUUuucCCCU- -5' |
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10992 | 3' | -51.2 | NC_002794.1 | + | 181060 | 0.68 | 0.985075 |
Target: 5'- gUCuCGGAGA--ACGCGGGuccgggcAGGGGc -3' miRNA: 3'- -AGuGCCUCUauUGCGCCUuu-----UCCCCu -5' |
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10992 | 3' | -51.2 | NC_002794.1 | + | 142704 | 0.68 | 0.985075 |
Target: 5'- -gGCGGAGAUcaaaaGugGUGGu--GGGGGu -3' miRNA: 3'- agUGCCUCUA-----UugCGCCuuuUCCCCu -5' |
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10992 | 3' | -51.2 | NC_002794.1 | + | 2998 | 0.69 | 0.979026 |
Target: 5'- gUCACGGGGcgGGgGgauucUGaGAAAAGGGGAa -3' miRNA: 3'- -AGUGCCUCuaUUgC-----GC-CUUUUCCCCU- -5' |
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10992 | 3' | -51.2 | NC_002794.1 | + | 142353 | 0.69 | 0.979026 |
Target: 5'- -gGCGGAGGcggcgGAgGCGGcgGAGGcGGAg -3' miRNA: 3'- agUGCCUCUa----UUgCGCCuuUUCC-CCU- -5' |
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10992 | 3' | -51.2 | NC_002794.1 | + | 108365 | 0.67 | 0.992091 |
Target: 5'- -aGCGGAGGaggaccgGGCGcCGGAGc-GGGGAg -3' miRNA: 3'- agUGCCUCUa------UUGC-GCCUUuuCCCCU- -5' |
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10992 | 3' | -51.2 | NC_002794.1 | + | 185471 | 0.67 | 0.993111 |
Target: 5'- cCGCGGGcGGcGGcCGCGGc-GAGGGGAc -3' miRNA: 3'- aGUGCCU-CUaUU-GCGCCuuUUCCCCU- -5' |
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10992 | 3' | -51.2 | NC_002794.1 | + | 135635 | 0.67 | 0.994023 |
Target: 5'- aCGuCGGcGAacaacAGCGCGGAGGguGGGGGGg -3' miRNA: 3'- aGU-GCCuCUa----UUGCGCCUUU--UCCCCU- -5' |
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10992 | 3' | -51.2 | NC_002794.1 | + | 109055 | 0.66 | 0.997668 |
Target: 5'- ---gGGAGAccugUGCGGAccagGAAGGGGGg -3' miRNA: 3'- agugCCUCUauu-GCGCCU----UUUCCCCU- -5' |
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10992 | 3' | -51.2 | NC_002794.1 | + | 120066 | 0.66 | 0.997668 |
Target: 5'- cCGCGGAGGccGACGCGGcgguGGcGGc -3' miRNA: 3'- aGUGCCUCUa-UUGCGCCuuuuCC-CCu -5' |
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10992 | 3' | -51.2 | NC_002794.1 | + | 136872 | 0.66 | 0.996751 |
Target: 5'- uUCugGGcccGGAUcugGACGUGGAGcAGGGa- -3' miRNA: 3'- -AGugCC---UCUA---UUGCGCCUUuUCCCcu -5' |
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10992 | 3' | -51.2 | NC_002794.1 | + | 115884 | 0.66 | 0.996751 |
Target: 5'- gUC-CGGGGcgucCGCGGAGcgcGGGGGGu -3' miRNA: 3'- -AGuGCCUCuauuGCGCCUUu--UCCCCU- -5' |
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10992 | 3' | -51.2 | NC_002794.1 | + | 95802 | 0.66 | 0.995487 |
Target: 5'- -gGCGGAGG-AAC-CGGggGagcggcggcggccGGGGGAg -3' miRNA: 3'- agUGCCUCUaUUGcGCCuuU-------------UCCCCU- -5' |
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10992 | 3' | -51.2 | NC_002794.1 | + | 177533 | 0.66 | 0.996192 |
Target: 5'- aCAaGGAGGggUGGCGCGGAacggaauaaAAAGGGa- -3' miRNA: 3'- aGUgCCUCU--AUUGCGCCU---------UUUCCCcu -5' |
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10992 | 3' | -51.2 | NC_002794.1 | + | 146746 | 0.66 | 0.994835 |
Target: 5'- -gACGGGc----CGCGGAucGGGGGAg -3' miRNA: 3'- agUGCCUcuauuGCGCCUuuUCCCCU- -5' |
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10992 | 3' | -51.2 | NC_002794.1 | + | 107547 | 0.67 | 0.994023 |
Target: 5'- -gGCGGcGAcGAcCGCGGu--GGGGGAg -3' miRNA: 3'- agUGCCuCUaUU-GCGCCuuuUCCCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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