miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10992 5' -50.6 NC_002794.1 + 84278 0.66 0.998597
Target:  5'- aUUCCgcagCUg--CCGaCGGGGAgcggcGGCGCu -3'
miRNA:   3'- cAAGGa---GAaaaGGC-GCCUCUa----CUGCG- -5'
10992 5' -50.6 NC_002794.1 + 129033 0.66 0.998597
Target:  5'- --gUCUCggcgaacugUCUGCGGucGUGGCGCg -3'
miRNA:   3'- caaGGAGaaa------AGGCGCCucUACUGCG- -5'
10992 5' -50.6 NC_002794.1 + 51202 0.66 0.998597
Target:  5'- cGUUCgCUCgc--CCGCGGAGcgGcCGg -3'
miRNA:   3'- -CAAG-GAGaaaaGGCGCCUCuaCuGCg -5'
10992 5' -50.6 NC_002794.1 + 137318 0.66 0.998597
Target:  5'- -gUCCaCggUUCCGCGGaAGGUucCGCg -3'
miRNA:   3'- caAGGaGaaAAGGCGCC-UCUAcuGCG- -5'
10992 5' -50.6 NC_002794.1 + 80510 0.66 0.997986
Target:  5'- -gUCUUCUgcgCCGCGGcGcgcGACGCc -3'
miRNA:   3'- caAGGAGAaaaGGCGCCuCua-CUGCG- -5'
10992 5' -50.6 NC_002794.1 + 120884 0.66 0.997606
Target:  5'- -gUCCgaacggCgaggucaCCGCGGGGGugcUGACGCg -3'
miRNA:   3'- caAGGa-----Gaaaa---GGCGCCUCU---ACUGCG- -5'
10992 5' -50.6 NC_002794.1 + 137655 0.66 0.997167
Target:  5'- cGggCCUCcggcgCCGCuGGuGcgGACGCa -3'
miRNA:   3'- -CaaGGAGaaaa-GGCG-CCuCuaCUGCG- -5'
10992 5' -50.6 NC_002794.1 + 145596 0.66 0.997167
Target:  5'- --gCCggCUc--CCGCGGAGucgGGCGCg -3'
miRNA:   3'- caaGGa-GAaaaGGCGCCUCua-CUGCG- -5'
10992 5' -50.6 NC_002794.1 + 12319 0.66 0.997167
Target:  5'- -cUCCUCcgcggUCCGCgugaccguGGAGAcgGACGUc -3'
miRNA:   3'- caAGGAGaaa--AGGCG--------CCUCUa-CUGCG- -5'
10992 5' -50.6 NC_002794.1 + 179106 0.66 0.996663
Target:  5'- -gUCCggucgUCCGCGGuccgGGCGCg -3'
miRNA:   3'- caAGGagaaaAGGCGCCucuaCUGCG- -5'
10992 5' -50.6 NC_002794.1 + 185214 0.67 0.995433
Target:  5'- ---gCUCgcg-CCGCGGAGAgucGCGCc -3'
miRNA:   3'- caagGAGaaaaGGCGCCUCUac-UGCG- -5'
10992 5' -50.6 NC_002794.1 + 41233 0.67 0.995433
Target:  5'- aUUCCUCccacgCCGCGGccGccGACGCc -3'
miRNA:   3'- cAAGGAGaaaa-GGCGCCu-CuaCUGCG- -5'
10992 5' -50.6 NC_002794.1 + 80547 0.67 0.994999
Target:  5'- --gCCUCUUccCCGCGGAcccguuccgcgccguGccGACGCa -3'
miRNA:   3'- caaGGAGAAaaGGCGCCU---------------CuaCUGCG- -5'
10992 5' -50.6 NC_002794.1 + 70660 0.67 0.994924
Target:  5'- --gCCUCgugcgcggcggccgCCGCGGcGGUGACGUc -3'
miRNA:   3'- caaGGAGaaaa----------GGCGCCuCUACUGCG- -5'
10992 5' -50.6 NC_002794.1 + 137413 0.67 0.993678
Target:  5'- -gUCCgcggacgCCGCGGAGAccGCGCc -3'
miRNA:   3'- caAGGagaaaa-GGCGCCUCUacUGCG- -5'
10992 5' -50.6 NC_002794.1 + 107867 0.69 0.982766
Target:  5'- -cUCCaCUgcaUCGCGGAGgcGGCGCg -3'
miRNA:   3'- caAGGaGAaaaGGCGCCUCuaCUGCG- -5'
10992 5' -50.6 NC_002794.1 + 90603 0.69 0.980698
Target:  5'- cGggCCUCgacggUCGCGGuGGAUGAgCGCg -3'
miRNA:   3'- -CaaGGAGaaaa-GGCGCC-UCUACU-GCG- -5'
10992 5' -50.6 NC_002794.1 + 80400 0.69 0.978451
Target:  5'- --aCCUaCUcg-CCGCGGcccAGGUGGCGCc -3'
miRNA:   3'- caaGGA-GAaaaGGCGCC---UCUACUGCG- -5'
10992 5' -50.6 NC_002794.1 + 83226 0.69 0.976016
Target:  5'- -aUCCUCgcgcUCGCGGAcGA-GACGCu -3'
miRNA:   3'- caAGGAGaaaaGGCGCCU-CUaCUGCG- -5'
10992 5' -50.6 NC_002794.1 + 69750 0.7 0.96425
Target:  5'- --gCCggCgacgCCGCGGGGAUGGCGa -3'
miRNA:   3'- caaGGa-GaaaaGGCGCCUCUACUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.