Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10992 | 5' | -50.6 | NC_002794.1 | + | 69354 | 0.73 | 0.90672 |
Target: 5'- --aUCUCguuccCCGCGGAGAUcgGGCGCg -3' miRNA: 3'- caaGGAGaaaa-GGCGCCUCUA--CUGCG- -5' |
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10992 | 5' | -50.6 | NC_002794.1 | + | 80547 | 0.67 | 0.994999 |
Target: 5'- --gCCUCUUccCCGCGGAcccguuccgcgccguGccGACGCa -3' miRNA: 3'- caaGGAGAAaaGGCGCCU---------------CuaCUGCG- -5' |
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10992 | 5' | -50.6 | NC_002794.1 | + | 70660 | 0.67 | 0.994924 |
Target: 5'- --gCCUCgugcgcggcggccgCCGCGGcGGUGACGUc -3' miRNA: 3'- caaGGAGaaaa----------GGCGCCuCUACUGCG- -5' |
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10992 | 5' | -50.6 | NC_002794.1 | + | 137413 | 0.67 | 0.993678 |
Target: 5'- -gUCCgcggacgCCGCGGAGAccGCGCc -3' miRNA: 3'- caAGGagaaaa-GGCGCCUCUacUGCG- -5' |
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10992 | 5' | -50.6 | NC_002794.1 | + | 107867 | 0.69 | 0.982766 |
Target: 5'- -cUCCaCUgcaUCGCGGAGgcGGCGCg -3' miRNA: 3'- caAGGaGAaaaGGCGCCUCuaCUGCG- -5' |
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10992 | 5' | -50.6 | NC_002794.1 | + | 90603 | 0.69 | 0.980698 |
Target: 5'- cGggCCUCgacggUCGCGGuGGAUGAgCGCg -3' miRNA: 3'- -CaaGGAGaaaa-GGCGCC-UCUACU-GCG- -5' |
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10992 | 5' | -50.6 | NC_002794.1 | + | 83226 | 0.69 | 0.976016 |
Target: 5'- -aUCCUCgcgcUCGCGGAcGA-GACGCu -3' miRNA: 3'- caAGGAGaaaaGGCGCCU-CUaCUGCG- -5' |
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10992 | 5' | -50.6 | NC_002794.1 | + | 80400 | 0.69 | 0.978451 |
Target: 5'- --aCCUaCUcg-CCGCGGcccAGGUGGCGCc -3' miRNA: 3'- caaGGA-GAaaaGGCGCC---UCUACUGCG- -5' |
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10992 | 5' | -50.6 | NC_002794.1 | + | 69750 | 0.7 | 0.96425 |
Target: 5'- --gCCggCgacgCCGCGGGGAUGGCGa -3' miRNA: 3'- caaGGa-GaaaaGGCGCCUCUACUGCg -5' |
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10992 | 5' | -50.6 | NC_002794.1 | + | 41233 | 0.67 | 0.995433 |
Target: 5'- aUUCCUCccacgCCGCGGccGccGACGCc -3' miRNA: 3'- cAAGGAGaaaa-GGCGCCu-CuaCUGCG- -5' |
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10992 | 5' | -50.6 | NC_002794.1 | + | 179106 | 0.66 | 0.996663 |
Target: 5'- -gUCCggucgUCCGCGGuccgGGCGCg -3' miRNA: 3'- caAGGagaaaAGGCGCCucuaCUGCG- -5' |
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10992 | 5' | -50.6 | NC_002794.1 | + | 185214 | 0.67 | 0.995433 |
Target: 5'- ---gCUCgcg-CCGCGGAGAgucGCGCc -3' miRNA: 3'- caagGAGaaaaGGCGCCUCUac-UGCG- -5' |
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10992 | 5' | -50.6 | NC_002794.1 | + | 129033 | 0.66 | 0.998597 |
Target: 5'- --gUCUCggcgaacugUCUGCGGucGUGGCGCg -3' miRNA: 3'- caaGGAGaaa------AGGCGCCucUACUGCG- -5' |
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10992 | 5' | -50.6 | NC_002794.1 | + | 51202 | 0.66 | 0.998597 |
Target: 5'- cGUUCgCUCgc--CCGCGGAGcgGcCGg -3' miRNA: 3'- -CAAG-GAGaaaaGGCGCCUCuaCuGCg -5' |
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10992 | 5' | -50.6 | NC_002794.1 | + | 137318 | 0.66 | 0.998597 |
Target: 5'- -gUCCaCggUUCCGCGGaAGGUucCGCg -3' miRNA: 3'- caAGGaGaaAAGGCGCC-UCUAcuGCG- -5' |
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10992 | 5' | -50.6 | NC_002794.1 | + | 120884 | 0.66 | 0.997606 |
Target: 5'- -gUCCgaacggCgaggucaCCGCGGGGGugcUGACGCg -3' miRNA: 3'- caAGGa-----Gaaaa---GGCGCCUCU---ACUGCG- -5' |
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10992 | 5' | -50.6 | NC_002794.1 | + | 80510 | 0.66 | 0.997986 |
Target: 5'- -gUCUUCUgcgCCGCGGcGcgcGACGCc -3' miRNA: 3'- caAGGAGAaaaGGCGCCuCua-CUGCG- -5' |
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10992 | 5' | -50.6 | NC_002794.1 | + | 137655 | 0.66 | 0.997167 |
Target: 5'- cGggCCUCcggcgCCGCuGGuGcgGACGCa -3' miRNA: 3'- -CaaGGAGaaaa-GGCG-CCuCuaCUGCG- -5' |
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10992 | 5' | -50.6 | NC_002794.1 | + | 145596 | 0.66 | 0.997167 |
Target: 5'- --gCCggCUc--CCGCGGAGucgGGCGCg -3' miRNA: 3'- caaGGa-GAaaaGGCGCCUCua-CUGCG- -5' |
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10992 | 5' | -50.6 | NC_002794.1 | + | 12319 | 0.66 | 0.997167 |
Target: 5'- -cUCCUCcgcggUCCGCgugaccguGGAGAcgGACGUc -3' miRNA: 3'- caAGGAGaaa--AGGCG--------CCUCUa-CUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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