miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10993 3' -55 NC_002794.1 + 41682 0.66 0.960122
Target:  5'- cGCaGGAGCGCcCGGAc---CGCCGGAu -3'
miRNA:   3'- -CGaUCUCGCGaGCCUagacGUGGUCU- -5'
10993 3' -55 NC_002794.1 + 130151 0.66 0.956454
Target:  5'- gGCgcGAGCGCg-GGAUCacgcGCGCgAGAg -3'
miRNA:   3'- -CGauCUCGCGagCCUAGa---CGUGgUCU- -5'
10993 3' -55 NC_002794.1 + 114257 0.66 0.952564
Target:  5'- --aAGAGCGuCUcCGGGggcgggucgugCUGCACCAGc -3'
miRNA:   3'- cgaUCUCGC-GA-GCCUa----------GACGUGGUCu -5'
10993 3' -55 NC_002794.1 + 187461 0.66 0.952564
Target:  5'- cGCUcGGcGuCGCUCGGcgC-GCGCCGGGc -3'
miRNA:   3'- -CGA-UCuC-GCGAGCCuaGaCGUGGUCU- -5'
10993 3' -55 NC_002794.1 + 16700 0.66 0.952564
Target:  5'- cGCUcgcGAGuCGCUCgccguccgaGGAgUCUGCGCCGGc -3'
miRNA:   3'- -CGAu--CUC-GCGAG---------CCU-AGACGUGGUCu -5'
10993 3' -55 NC_002794.1 + 146936 0.66 0.948446
Target:  5'- --gAGAGCGCUCGG-UCUG-GCguGGc -3'
miRNA:   3'- cgaUCUCGCGAGCCuAGACgUGguCU- -5'
10993 3' -55 NC_002794.1 + 19799 0.66 0.944098
Target:  5'- cGCUGcucCGCUCGGAcCgcGCGCCGGAc -3'
miRNA:   3'- -CGAUcucGCGAGCCUaGa-CGUGGUCU- -5'
10993 3' -55 NC_002794.1 + 187824 0.67 0.939518
Target:  5'- aGCggAGcGCGCUCGGcUCggcGCGCCgAGGg -3'
miRNA:   3'- -CGa-UCuCGCGAGCCuAGa--CGUGG-UCU- -5'
10993 3' -55 NC_002794.1 + 42981 0.67 0.939518
Target:  5'- aGCUGGuGCGC-CaGGAUgCgcagGCACCGGu -3'
miRNA:   3'- -CGAUCuCGCGaG-CCUA-Ga---CGUGGUCu -5'
10993 3' -55 NC_002794.1 + 191878 0.67 0.934703
Target:  5'- gGCggagGGGGCgGCggaggCgGGAUCgGCACCGGGa -3'
miRNA:   3'- -CGa---UCUCG-CGa----G-CCUAGaCGUGGUCU- -5'
10993 3' -55 NC_002794.1 + 146909 0.67 0.924363
Target:  5'- cGCUcGGGCGCggGGAUCg--GCCGGAc -3'
miRNA:   3'- -CGAuCUCGCGagCCUAGacgUGGUCU- -5'
10993 3' -55 NC_002794.1 + 119735 0.67 0.924363
Target:  5'- ---cGGGCGCUCGGcguGUUUGCGcagcuCCGGAc -3'
miRNA:   3'- cgauCUCGCGAGCC---UAGACGU-----GGUCU- -5'
10993 3' -55 NC_002794.1 + 117851 0.67 0.924363
Target:  5'- --cGGAGCGCgaCGGGggCUggcGCGCCAGGg -3'
miRNA:   3'- cgaUCUCGCGa-GCCUa-GA---CGUGGUCU- -5'
10993 3' -55 NC_002794.1 + 148389 0.67 0.918838
Target:  5'- uCUGGAGCGCgagcgaaaUCGGuuccgUUGCACCAu- -3'
miRNA:   3'- cGAUCUCGCG--------AGCCua---GACGUGGUcu -5'
10993 3' -55 NC_002794.1 + 104520 0.68 0.894395
Target:  5'- gGCUGaGGCGCggguggcgCGGGaagagCUGCGCCAGc -3'
miRNA:   3'- -CGAUcUCGCGa-------GCCUa----GACGUGGUCu -5'
10993 3' -55 NC_002794.1 + 20031 0.69 0.85878
Target:  5'- --gAGAGCGCggucCGGAUCgcGCucgACCAGAu -3'
miRNA:   3'- cgaUCUCGCGa---GCCUAGa-CG---UGGUCU- -5'
10993 3' -55 NC_002794.1 + 151505 0.69 0.843076
Target:  5'- cGCgu--GCGCUCGGuUCggguggccuggUGCGCCAGAc -3'
miRNA:   3'- -CGaucuCGCGAGCCuAG-----------ACGUGGUCU- -5'
10993 3' -55 NC_002794.1 + 63017 0.69 0.843076
Target:  5'- gGCUGGAGCugguGCUCGc--CUGCGCgCAGGa -3'
miRNA:   3'- -CGAUCUCG----CGAGCcuaGACGUG-GUCU- -5'
10993 3' -55 NC_002794.1 + 126115 0.7 0.834936
Target:  5'- cCUGGGcgccGCGCUCG--UCUGCGCCGGu -3'
miRNA:   3'- cGAUCU----CGCGAGCcuAGACGUGGUCu -5'
10993 3' -55 NC_002794.1 + 62367 0.7 0.791652
Target:  5'- cGUUGGAcCGCUCGGAcgaagcgCUGCACCuccGAc -3'
miRNA:   3'- -CGAUCUcGCGAGCCUa------GACGUGGu--CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.