miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10993 5' -62.6 NC_002794.1 + 124138 0.66 0.71987
Target:  5'- -cUCCGGCGCccgggagcGGuCUCCGCgGGGCc- -3'
miRNA:   3'- gcAGGCCGCGu-------CC-GAGGUGgCCUGca -5'
10993 5' -62.6 NC_002794.1 + 150604 0.66 0.71987
Target:  5'- aCGgCCgGGCGCcGGCUCUGCgGGAgcuCGUg -3'
miRNA:   3'- -GCaGG-CCGCGuCCGAGGUGgCCU---GCA- -5'
10993 5' -62.6 NC_002794.1 + 64017 0.66 0.71987
Target:  5'- gCGgCUGGCGauguCGGaGCUCCAgUGGACGg -3'
miRNA:   3'- -GCaGGCCGC----GUC-CGAGGUgGCCUGCa -5'
10993 5' -62.6 NC_002794.1 + 179654 0.66 0.710562
Target:  5'- aGUCaGGCG--GGCU-CGCCGGACGg -3'
miRNA:   3'- gCAGgCCGCguCCGAgGUGGCCUGCa -5'
10993 5' -62.6 NC_002794.1 + 142146 0.66 0.701195
Target:  5'- gGUCaCGGCGgAGGCggcgguagCACCGGcaGCGUc -3'
miRNA:   3'- gCAG-GCCGCgUCCGag------GUGGCC--UGCA- -5'
10993 5' -62.6 NC_002794.1 + 44444 0.66 0.701195
Target:  5'- --aCCGGCGC--GC-CCGCCcGGACGUc -3'
miRNA:   3'- gcaGGCCGCGucCGaGGUGG-CCUGCA- -5'
10993 5' -62.6 NC_002794.1 + 191436 0.66 0.701195
Target:  5'- gGUCCGGCu----CUCaCACCGGACGg -3'
miRNA:   3'- gCAGGCCGcguccGAG-GUGGCCUGCa -5'
10993 5' -62.6 NC_002794.1 + 49103 0.66 0.700256
Target:  5'- gCG-CCGGCGCucGGCgUCCugcaccgggaccgGCCGGAgGUc -3'
miRNA:   3'- -GCaGGCCGCGu-CCG-AGG-------------UGGCCUgCA- -5'
10993 5' -62.6 NC_002794.1 + 111970 0.66 0.691778
Target:  5'- cCGUagCCGaGCGuCAGG-UCCACCGGcACGc -3'
miRNA:   3'- -GCA--GGC-CGC-GUCCgAGGUGGCC-UGCa -5'
10993 5' -62.6 NC_002794.1 + 49035 0.66 0.691778
Target:  5'- uCGUCCGGCGCGGucgucaGCgUCCA--GGGCGc -3'
miRNA:   3'- -GCAGGCCGCGUC------CG-AGGUggCCUGCa -5'
10993 5' -62.6 NC_002794.1 + 109531 0.66 0.691778
Target:  5'- uCGUUCGGCGuCGGGC-CgGgCGGACc- -3'
miRNA:   3'- -GCAGGCCGC-GUCCGaGgUgGCCUGca -5'
10993 5' -62.6 NC_002794.1 + 86028 0.66 0.691778
Target:  5'- cCGUgCGGCGgaCAGGCcUCAUCGGGCc- -3'
miRNA:   3'- -GCAgGCCGC--GUCCGaGGUGGCCUGca -5'
10993 5' -62.6 NC_002794.1 + 185788 0.66 0.691778
Target:  5'- uCGgCCGGCGCGGGgaCCcacaucGCCGGGa-- -3'
miRNA:   3'- -GCaGGCCGCGUCCgaGG------UGGCCUgca -5'
10993 5' -62.6 NC_002794.1 + 67015 0.66 0.682317
Target:  5'- aGUCCGGCgGCGgcggccGGCUCCcGCCGcgucgcggacccGGCGUc -3'
miRNA:   3'- gCAGGCCG-CGU------CCGAGG-UGGC------------CUGCA- -5'
10993 5' -62.6 NC_002794.1 + 80406 0.66 0.682317
Target:  5'- uCGcCgCGGCcCAGGUggCGCCGGGCGg -3'
miRNA:   3'- -GCaG-GCCGcGUCCGagGUGGCCUGCa -5'
10993 5' -62.6 NC_002794.1 + 125734 0.66 0.682317
Target:  5'- aGga-GGCGgAGGCgggCCGCgGGACGg -3'
miRNA:   3'- gCaggCCGCgUCCGa--GGUGgCCUGCa -5'
10993 5' -62.6 NC_002794.1 + 152596 0.66 0.682317
Target:  5'- aCGUCCcugcGGCGCGGGC-CCAagCGG-CGc -3'
miRNA:   3'- -GCAGG----CCGCGUCCGaGGUg-GCCuGCa -5'
10993 5' -62.6 NC_002794.1 + 193065 0.66 0.682317
Target:  5'- --aCCGGCuGCGGGCcgUCGCgGGACa- -3'
miRNA:   3'- gcaGGCCG-CGUCCGa-GGUGgCCUGca -5'
10993 5' -62.6 NC_002794.1 + 88816 0.66 0.682317
Target:  5'- cCGUUCGGCuaAGcgUCCACCGGuCGUu -3'
miRNA:   3'- -GCAGGCCGcgUCcgAGGUGGCCuGCA- -5'
10993 5' -62.6 NC_002794.1 + 142396 0.66 0.68042
Target:  5'- aCGg-CGGUGCAGGCggcgucggcggCGCCGGGCGc -3'
miRNA:   3'- -GCagGCCGCGUCCGag---------GUGGCCUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.