miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10993 5' -62.6 NC_002794.1 + 2349 0.69 0.494096
Target:  5'- gGUCCGGa-CAGGCUCuCGCCccacccuccgGGACGa -3'
miRNA:   3'- gCAGGCCgcGUCCGAG-GUGG----------CCUGCa -5'
10993 5' -62.6 NC_002794.1 + 12189 0.69 0.539803
Target:  5'- cCGcCgCGGC-CGGGCgCCGCuCGGACGUg -3'
miRNA:   3'- -GCaG-GCCGcGUCCGaGGUG-GCCUGCA- -5'
10993 5' -62.6 NC_002794.1 + 17912 0.67 0.625037
Target:  5'- gCGUCCGGCagcucaccaccgGCcGGCUCCccgACCuGGCGg -3'
miRNA:   3'- -GCAGGCCG------------CGuCCGAGG---UGGcCUGCa -5'
10993 5' -62.6 NC_002794.1 + 19528 0.72 0.384811
Target:  5'- gCG-CCGGCGCGGcGCggcCCGCCGGuguCGg -3'
miRNA:   3'- -GCaGGCCGCGUC-CGa--GGUGGCCu--GCa -5'
10993 5' -62.6 NC_002794.1 + 30686 0.72 0.36195
Target:  5'- aCGUCCGGCggacguGCAcGUUCCGCCGGuuGUa -3'
miRNA:   3'- -GCAGGCCG------CGUcCGAGGUGGCCugCA- -5'
10993 5' -62.6 NC_002794.1 + 30986 0.71 0.39264
Target:  5'- --cCCGGCGacggcgGGGuCUUCGCCGGACGUc -3'
miRNA:   3'- gcaGGCCGCg-----UCC-GAGGUGGCCUGCA- -5'
10993 5' -62.6 NC_002794.1 + 33438 0.75 0.249635
Target:  5'- gGUcCCGGUGCAGGaccucgggcggCCGCCGGACGc -3'
miRNA:   3'- gCA-GGCCGCGUCCga---------GGUGGCCUGCa -5'
10993 5' -62.6 NC_002794.1 + 34080 0.67 0.63461
Target:  5'- cCG-CCGGCGgcCGGGCagCCGUCGGGCGg -3'
miRNA:   3'- -GCaGGCCGC--GUCCGa-GGUGGCCUGCa -5'
10993 5' -62.6 NC_002794.1 + 37114 0.69 0.549124
Target:  5'- gCGUCaCGGCgaagacccGCA-GCUCCGCCGGGuCGa -3'
miRNA:   3'- -GCAG-GCCG--------CGUcCGAGGUGGCCU-GCa -5'
10993 5' -62.6 NC_002794.1 + 41200 0.67 0.663294
Target:  5'- uCGUCaCGGCGCu-GCUgCCACCGGccucCGg -3'
miRNA:   3'- -GCAG-GCCGCGucCGA-GGUGGCCu---GCa -5'
10993 5' -62.6 NC_002794.1 + 44213 0.75 0.239708
Target:  5'- aCGUCCGGCuCGGGCgCCgagggcucgguGCCGGGCGg -3'
miRNA:   3'- -GCAGGCCGcGUCCGaGG-----------UGGCCUGCa -5'
10993 5' -62.6 NC_002794.1 + 44444 0.66 0.701195
Target:  5'- --aCCGGCGC--GC-CCGCCcGGACGUc -3'
miRNA:   3'- gcaGGCCGCGucCGaGGUGG-CCUGCA- -5'
10993 5' -62.6 NC_002794.1 + 47954 0.68 0.558495
Target:  5'- gCGUcCCGGCGCcGGCUgggcgaCCGCCGcGCGc -3'
miRNA:   3'- -GCA-GGCCGCGuCCGA------GGUGGCcUGCa -5'
10993 5' -62.6 NC_002794.1 + 49035 0.66 0.691778
Target:  5'- uCGUCCGGCGCGGucgucaGCgUCCA--GGGCGc -3'
miRNA:   3'- -GCAGGCCGCGUC------CG-AGGUggCCUGCa -5'
10993 5' -62.6 NC_002794.1 + 49103 0.66 0.700256
Target:  5'- gCG-CCGGCGCucGGCgUCCugcaccgggaccgGCCGGAgGUc -3'
miRNA:   3'- -GCaGGCCGCGu-CCG-AGG-------------UGGCCUgCA- -5'
10993 5' -62.6 NC_002794.1 + 49440 0.73 0.305724
Target:  5'- gCGUCCGGCGCGgucgucgccguGGCgCCGCCGuGACc- -3'
miRNA:   3'- -GCAGGCCGCGU-----------CCGaGGUGGC-CUGca -5'
10993 5' -62.6 NC_002794.1 + 50811 0.7 0.458842
Target:  5'- gCGUCgGGCGCuccGGCgcccCCGCCcucGGGCGUc -3'
miRNA:   3'- -GCAGgCCGCGu--CCGa---GGUGG---CCUGCA- -5'
10993 5' -62.6 NC_002794.1 + 51382 0.69 0.530536
Target:  5'- cCGgCCGGCGaCAGGCgcCCuCCGGGCu- -3'
miRNA:   3'- -GCaGGCCGC-GUCCGa-GGuGGCCUGca -5'
10993 5' -62.6 NC_002794.1 + 53591 0.67 0.63461
Target:  5'- cCGUgUCGGCGUcGGCgUCACCGGGCc- -3'
miRNA:   3'- -GCA-GGCCGCGuCCGaGGUGGCCUGca -5'
10993 5' -62.6 NC_002794.1 + 54856 0.67 0.663294
Target:  5'- cCGUaggCCGGCGCGGGCcgCCGCa--GCGUc -3'
miRNA:   3'- -GCA---GGCCGCGUCCGa-GGUGgccUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.