miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10994 5' -54.2 NC_002794.1 + 119538 0.66 0.982693
Target:  5'- cCCUCGuccgCG-GCCgUCGCCGGCCa -3'
miRNA:   3'- aGGAGCcuuaGCaUGG-AGCGGUUGGc -5'
10994 5' -54.2 NC_002794.1 + 105800 0.66 0.982693
Target:  5'- gUCUCGGAGaCGgACCgaaaGCgCGACCGg -3'
miRNA:   3'- aGGAGCCUUaGCaUGGag--CG-GUUGGC- -5'
10994 5' -54.2 NC_002794.1 + 109545 0.66 0.982693
Target:  5'- gCCgggCGGAccgGUC-UACCUCGCCccCCa -3'
miRNA:   3'- aGGa--GCCU---UAGcAUGGAGCGGuuGGc -5'
10994 5' -54.2 NC_002794.1 + 102874 0.66 0.982693
Target:  5'- ---cCGGGAUCGguuUCUgGCCGACCu -3'
miRNA:   3'- aggaGCCUUAGCau-GGAgCGGUUGGc -5'
10994 5' -54.2 NC_002794.1 + 49482 0.66 0.982693
Target:  5'- gCCgCGGGucuGUCG-ACCUCGUC-GCCGu -3'
miRNA:   3'- aGGaGCCU---UAGCaUGGAGCGGuUGGC- -5'
10994 5' -54.2 NC_002794.1 + 67646 0.66 0.980688
Target:  5'- gCC-CGGcGUCcacauccgccaaGUgacagACCUCGCCGACCGu -3'
miRNA:   3'- aGGaGCCuUAG------------CA-----UGGAGCGGUUGGC- -5'
10994 5' -54.2 NC_002794.1 + 78867 0.66 0.980688
Target:  5'- cUCUCGGAGcucagccgccUCG-ACCUCcUCGGCCGg -3'
miRNA:   3'- aGGAGCCUU----------AGCaUGGAGcGGUUGGC- -5'
10994 5' -54.2 NC_002794.1 + 137545 0.66 0.980688
Target:  5'- gUCUUCGGGcgcgaagaacGUCGcGCCgccgUCGCC-GCCGg -3'
miRNA:   3'- -AGGAGCCU----------UAGCaUGG----AGCGGuUGGC- -5'
10994 5' -54.2 NC_002794.1 + 129255 0.66 0.980478
Target:  5'- -aCUCGG-GUCGagcGCCUCGUCGugagcggGCCGg -3'
miRNA:   3'- agGAGCCuUAGCa--UGGAGCGGU-------UGGC- -5'
10994 5' -54.2 NC_002794.1 + 186125 0.66 0.979404
Target:  5'- gUCCcCGGAucuccagcacggcCGUcacgccuuccGCCUCGCCGGCCu -3'
miRNA:   3'- -AGGaGCCUua-----------GCA----------UGGAGCGGUUGGc -5'
10994 5' -54.2 NC_002794.1 + 187563 0.66 0.978514
Target:  5'- gCCgUCGGGccCGUACC-CGCCGucggcgcgGCCGc -3'
miRNA:   3'- aGG-AGCCUuaGCAUGGaGCGGU--------UGGC- -5'
10994 5' -54.2 NC_002794.1 + 191625 0.66 0.978514
Target:  5'- aCCgaaCGGggUUuccGCCUCGCCGuccagcagcccGCCGg -3'
miRNA:   3'- aGGa--GCCuuAGca-UGGAGCGGU-----------UGGC- -5'
10994 5' -54.2 NC_002794.1 + 89244 0.66 0.976165
Target:  5'- -aCUCGGcgg-GUACCgUCGCUGGCCGu -3'
miRNA:   3'- agGAGCCuuagCAUGG-AGCGGUUGGC- -5'
10994 5' -54.2 NC_002794.1 + 21568 0.66 0.976165
Target:  5'- cUCCUCGGGuUCGUcg--UGCgCGACCGg -3'
miRNA:   3'- -AGGAGCCUuAGCAuggaGCG-GUUGGC- -5'
10994 5' -54.2 NC_002794.1 + 67447 0.66 0.973633
Target:  5'- gCUUCGGGcUCccGCCcgcacUCGCCGACCa -3'
miRNA:   3'- aGGAGCCUuAGcaUGG-----AGCGGUUGGc -5'
10994 5' -54.2 NC_002794.1 + 103825 0.66 0.973633
Target:  5'- gCCgacgUGGAGUCGcagGCCUUGaCCA-CCGa -3'
miRNA:   3'- aGGa---GCCUUAGCa--UGGAGC-GGUuGGC- -5'
10994 5' -54.2 NC_002794.1 + 124926 0.66 0.973633
Target:  5'- gUCCUCGGugcgCGUggACCUCGaCUucuCCGu -3'
miRNA:   3'- -AGGAGCCuua-GCA--UGGAGC-GGuu-GGC- -5'
10994 5' -54.2 NC_002794.1 + 182103 0.66 0.973633
Target:  5'- uUCUUCGcGGuagCGgauCCggCGCCAGCCGa -3'
miRNA:   3'- -AGGAGC-CUua-GCau-GGa-GCGGUUGGC- -5'
10994 5' -54.2 NC_002794.1 + 138873 0.66 0.970911
Target:  5'- gCCUCgcgGGAGUCGUcGCuCUCGCCuuCUu -3'
miRNA:   3'- aGGAG---CCUUAGCA-UG-GAGCGGuuGGc -5'
10994 5' -54.2 NC_002794.1 + 43173 0.67 0.967994
Target:  5'- gCgaCGGAAUagcgGUugCgcgCGCCGACCGg -3'
miRNA:   3'- aGgaGCCUUAg---CAugGa--GCGGUUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.