Results 41 - 60 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10994 | 5' | -54.2 | NC_002794.1 | + | 105606 | 0.68 | 0.946078 |
Target: 5'- gUCUUCGGcGGUCGUcaGgCUCGgCGACCa -3' miRNA: 3'- -AGGAGCC-UUAGCA--UgGAGCgGUUGGc -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 108941 | 0.68 | 0.950278 |
Target: 5'- cUUCUCGGA--CGUGCUUC-UCGACCGu -3' miRNA: 3'- -AGGAGCCUuaGCAUGGAGcGGUUGGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 150523 | 0.68 | 0.950278 |
Target: 5'- cUCCUCGGcccCGUaGCCgggccggCGCCAugGCCGu -3' miRNA: 3'- -AGGAGCCuuaGCA-UGGa------GCGGU--UGGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 189761 | 0.69 | 0.904208 |
Target: 5'- -aCUCGGuuUCgGUGCaC-CGCCAGCCGc -3' miRNA: 3'- agGAGCCuuAG-CAUG-GaGCGGUUGGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 80720 | 0.69 | 0.91606 |
Target: 5'- gCCUUGGAcGUCG-ACCUgGCCcuCCGc -3' miRNA: 3'- aGGAGCCU-UAGCaUGGAgCGGuuGGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 116217 | 0.69 | 0.91606 |
Target: 5'- gCCUCGGccgcgcggcucgAGUCGaUGCC-CGCCGugCGc -3' miRNA: 3'- aGGAGCC------------UUAGC-AUGGaGCGGUugGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 192354 | 0.69 | 0.91606 |
Target: 5'- aCCUCGGccUCc-GCCgcCGCCGACCGa -3' miRNA: 3'- aGGAGCCuuAGcaUGGa-GCGGUUGGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 146230 | 0.69 | 0.921641 |
Target: 5'- cUCCUCGGucgcggcGUCGUcauCgUCGUCGACCu -3' miRNA: 3'- -AGGAGCCu------UAGCAu--GgAGCGGUUGGc -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 193385 | 0.69 | 0.921641 |
Target: 5'- cUCCUCGccGUCGUccGCCUCGCgCucGCCu -3' miRNA: 3'- -AGGAGCcuUAGCA--UGGAGCG-Gu-UGGc -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 65292 | 0.69 | 0.921641 |
Target: 5'- cCCUCGGcGUCGU-CCUCGagaCGACa- -3' miRNA: 3'- aGGAGCCuUAGCAuGGAGCg--GUUGgc -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 68861 | 0.69 | 0.926991 |
Target: 5'- aCCcCGGAGcUCGgg-CUCGCCGGCCu -3' miRNA: 3'- aGGaGCCUU-AGCaugGAGCGGUUGGc -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 80204 | 0.7 | 0.870667 |
Target: 5'- gCCUgGGcGGUCGacgacGCCUCGCCGcacACCGg -3' miRNA: 3'- aGGAgCC-UUAGCa----UGGAGCGGU---UGGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 191140 | 0.7 | 0.870667 |
Target: 5'- cCCUCGaAGUCGUccagcACCUCGUCGuACCa -3' miRNA: 3'- aGGAGCcUUAGCA-----UGGAGCGGU-UGGc -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 88743 | 0.7 | 0.877104 |
Target: 5'- aCCUCGGggUCGccgaggaauguggUGCCUgGCgucGCCGg -3' miRNA: 3'- aGGAGCCuuAGC-------------AUGGAgCGgu-UGGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 154314 | 0.7 | 0.877808 |
Target: 5'- cUCCUCGGGagagcggcgucgGUCGUcCCgggUGCCGcgGCCGa -3' miRNA: 3'- -AGGAGCCU------------UAGCAuGGa--GCGGU--UGGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 82056 | 0.71 | 0.855768 |
Target: 5'- gCggCGGcGUCGUccucgGCCUCGCCGGCCc -3' miRNA: 3'- aGgaGCCuUAGCA-----UGGAGCGGUUGGc -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 54133 | 0.71 | 0.855768 |
Target: 5'- aUCUUCGGca-CGUugUUgGCCAGCCGc -3' miRNA: 3'- -AGGAGCCuuaGCAugGAgCGGUUGGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 96960 | 0.71 | 0.854234 |
Target: 5'- aCCUCGGccgacaccacCGUGCCUCGCgAGCgCGu -3' miRNA: 3'- aGGAGCCuua-------GCAUGGAGCGgUUG-GC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 75285 | 0.71 | 0.848021 |
Target: 5'- aCC-CGGccggcCGgcGCCUCGCCAGCCGa -3' miRNA: 3'- aGGaGCCuua--GCa-UGGAGCGGUUGGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 128367 | 0.71 | 0.815203 |
Target: 5'- aCCUCGGAAcgagcUCGgacgUCUCGCCGAucCCGg -3' miRNA: 3'- aGGAGCCUU-----AGCau--GGAGCGGUU--GGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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