Results 1 - 20 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10994 | 5' | -54.2 | NC_002794.1 | + | 119499 | 0.77 | 0.533734 |
Target: 5'- gUCCUCGGggUCGUcggcgGCgCggaGCCGGCCGc -3' miRNA: 3'- -AGGAGCCuuAGCA-----UG-Gag-CGGUUGGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 53719 | 0.77 | 0.543509 |
Target: 5'- cCCUCGGggUggaccCGcGCCaUCGCCGGCCGc -3' miRNA: 3'- aGGAGCCuuA-----GCaUGG-AGCGGUUGGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 191767 | 0.76 | 0.567196 |
Target: 5'- cCCUCGGAAUCGU-CCgcgacgcucgaacguUCGCuCGACCGc -3' miRNA: 3'- aGGAGCCUUAGCAuGG---------------AGCG-GUUGGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 73239 | 0.75 | 0.64345 |
Target: 5'- cUCCUCGGccacuccGUCGUcuccccgaccccACCUcCGCCGACCGc -3' miRNA: 3'- -AGGAGCCu------UAGCA------------UGGA-GCGGUUGGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 143721 | 0.74 | 0.673591 |
Target: 5'- cCCggCGGGcGUCGU-CCUCGCCcGCCGg -3' miRNA: 3'- aGGa-GCCU-UAGCAuGGAGCGGuUGGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 72879 | 0.73 | 0.723055 |
Target: 5'- cUCCUCGGccgGGUCGcggcccuCCUCGCCA-CCGu -3' miRNA: 3'- -AGGAGCC---UUAGCau-----GGAGCGGUuGGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 98989 | 0.73 | 0.713278 |
Target: 5'- gCCUCGGuGGUCGgcgGCUUCGUCAGCUu -3' miRNA: 3'- aGGAGCC-UUAGCa--UGGAGCGGUUGGc -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 82056 | 0.71 | 0.855768 |
Target: 5'- gCggCGGcGUCGUccucgGCCUCGCCGGCCc -3' miRNA: 3'- aGgaGCCuUAGCA-----UGGAGCGGUUGGc -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 75285 | 0.71 | 0.848021 |
Target: 5'- aCC-CGGccggcCGgcGCCUCGCCAGCCGa -3' miRNA: 3'- aGGaGCCuua--GCa-UGGAGCGGUUGGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 54133 | 0.71 | 0.855768 |
Target: 5'- aUCUUCGGca-CGUugUUgGCCAGCCGc -3' miRNA: 3'- -AGGAGCCuuaGCAugGAgCGGUUGGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 128367 | 0.71 | 0.815203 |
Target: 5'- aCCUCGGAAcgagcUCGgacgUCUCGCCGAucCCGg -3' miRNA: 3'- aGGAGCCUU-----AGCau--GGAGCGGUU--GGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 96960 | 0.71 | 0.854234 |
Target: 5'- aCCUCGGccgacaccacCGUGCCUCGCgAGCgCGu -3' miRNA: 3'- aGGAGCCuua-------GCAUGGAGCGgUUG-GC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 191140 | 0.7 | 0.870667 |
Target: 5'- cCCUCGaAGUCGUccagcACCUCGUCGuACCa -3' miRNA: 3'- aGGAGCcUUAGCA-----UGGAGCGGU-UGGc -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 154314 | 0.7 | 0.877808 |
Target: 5'- cUCCUCGGGagagcggcgucgGUCGUcCCgggUGCCGcgGCCGa -3' miRNA: 3'- -AGGAGCCU------------UAGCAuGGa--GCGGU--UGGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 80204 | 0.7 | 0.870667 |
Target: 5'- gCCUgGGcGGUCGacgacGCCUCGCCGcacACCGg -3' miRNA: 3'- aGGAgCC-UUAGCa----UGGAGCGGU---UGGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 88743 | 0.7 | 0.877104 |
Target: 5'- aCCUCGGggUCGccgaggaauguggUGCCUgGCgucGCCGg -3' miRNA: 3'- aGGAGCCuuAGC-------------AUGGAgCGgu-UGGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 193385 | 0.69 | 0.921641 |
Target: 5'- cUCCUCGccGUCGUccGCCUCGCgCucGCCu -3' miRNA: 3'- -AGGAGCcuUAGCA--UGGAGCG-Gu-UGGc -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 116217 | 0.69 | 0.91606 |
Target: 5'- gCCUCGGccgcgcggcucgAGUCGaUGCC-CGCCGugCGc -3' miRNA: 3'- aGGAGCC------------UUAGC-AUGGaGCGGUugGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 80720 | 0.69 | 0.91606 |
Target: 5'- gCCUUGGAcGUCG-ACCUgGCCcuCCGc -3' miRNA: 3'- aGGAGCCU-UAGCaUGGAgCGGuuGGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 192354 | 0.69 | 0.91606 |
Target: 5'- aCCUCGGccUCc-GCCgcCGCCGACCGa -3' miRNA: 3'- aGGAGCCuuAGcaUGGa-GCGGUUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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