Results 21 - 40 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10994 | 5' | -54.2 | NC_002794.1 | + | 65292 | 0.69 | 0.921641 |
Target: 5'- cCCUCGGcGUCGU-CCUCGagaCGACa- -3' miRNA: 3'- aGGAGCCuUAGCAuGGAGCg--GUUGgc -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 192354 | 0.69 | 0.91606 |
Target: 5'- aCCUCGGccUCc-GCCgcCGCCGACCGa -3' miRNA: 3'- aGGAGCCuuAGcaUGGa-GCGGUUGGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 68861 | 0.69 | 0.926991 |
Target: 5'- aCCcCGGAGcUCGgg-CUCGCCGGCCu -3' miRNA: 3'- aGGaGCCUU-AGCaugGAGCGGUUGGc -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 146230 | 0.69 | 0.921641 |
Target: 5'- cUCCUCGGucgcggcGUCGUcauCgUCGUCGACCu -3' miRNA: 3'- -AGGAGCCu------UAGCAu--GgAGCGGUUGGc -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 128172 | 0.68 | 0.936995 |
Target: 5'- gCCgCGGAcggGUCGgugACCUCGUCggUCGc -3' miRNA: 3'- aGGaGCCU---UAGCa--UGGAGCGGuuGGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 108941 | 0.68 | 0.950278 |
Target: 5'- cUUCUCGGA--CGUGCUUC-UCGACCGu -3' miRNA: 3'- -AGGAGCCUuaGCAUGGAGcGGUUGGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 150523 | 0.68 | 0.950278 |
Target: 5'- cUCCUCGGcccCGUaGCCgggccggCGCCAugGCCGu -3' miRNA: 3'- -AGGAGCCuuaGCA-UGGa------GCGGU--UGGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 141791 | 0.68 | 0.936995 |
Target: 5'- gUCCgaCGGGcgCGggucgGCCUCGgaCAGCCGg -3' miRNA: 3'- -AGGa-GCCUuaGCa----UGGAGCg-GUUGGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 58918 | 0.68 | 0.941651 |
Target: 5'- aUCUCGGA--CGUGCCgCGCCugcacGCCa -3' miRNA: 3'- aGGAGCCUuaGCAUGGaGCGGu----UGGc -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 189862 | 0.68 | 0.941651 |
Target: 5'- gCCgUCGGcGUCGUcGCC--GCCGACCGg -3' miRNA: 3'- aGG-AGCCuUAGCA-UGGagCGGUUGGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 142973 | 0.68 | 0.941651 |
Target: 5'- cUCCUCGucGAGgggcugCGUGCC-CGCCGugGCCa -3' miRNA: 3'- -AGGAGC--CUUa-----GCAUGGaGCGGU--UGGc -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 188218 | 0.68 | 0.936995 |
Target: 5'- gUCCUCGucGUCGUcgucaucguCgUCGUCGACCGg -3' miRNA: 3'- -AGGAGCcuUAGCAu--------GgAGCGGUUGGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 65245 | 0.68 | 0.941651 |
Target: 5'- gCCgcggCGGcGAUCcgGCCUCGCCGAgCGg -3' miRNA: 3'- aGGa---GCC-UUAGcaUGGAGCGGUUgGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 12369 | 0.68 | 0.932109 |
Target: 5'- aCCUCGG---CGUG-CUCGCCuGCCGc -3' miRNA: 3'- aGGAGCCuuaGCAUgGAGCGGuUGGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 105606 | 0.68 | 0.946078 |
Target: 5'- gUCUUCGGcGGUCGUcaGgCUCGgCGACCa -3' miRNA: 3'- -AGGAGCC-UUAGCA--UgGAGCgGUUGGc -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 47483 | 0.67 | 0.961548 |
Target: 5'- gCC-CGGggUCGaGCUUCaCCAGCUGc -3' miRNA: 3'- aGGaGCCuuAGCaUGGAGcGGUUGGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 84887 | 0.67 | 0.964875 |
Target: 5'- aCgUCGGGcugUGUGCCUCGCUGcCCa -3' miRNA: 3'- aGgAGCCUua-GCAUGGAGCGGUuGGc -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 71950 | 0.67 | 0.961548 |
Target: 5'- cUCCUCGccgaCGUACCggCGCauCAGCCGg -3' miRNA: 3'- -AGGAGCcuuaGCAUGGa-GCG--GUUGGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 19285 | 0.67 | 0.964875 |
Target: 5'- cUCCUggccUGGAGccUCGUcGCgUCGCUGACCGc -3' miRNA: 3'- -AGGA----GCCUU--AGCA-UGgAGCGGUUGGC- -5' |
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10994 | 5' | -54.2 | NC_002794.1 | + | 148635 | 0.67 | 0.964875 |
Target: 5'- cUCCgaucgCGGcggCGUGCUcggcuacgCGCCGACCGa -3' miRNA: 3'- -AGGa----GCCuuaGCAUGGa-------GCGGUUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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