miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10994 5' -54.2 NC_002794.1 + 119499 0.77 0.533734
Target:  5'- gUCCUCGGggUCGUcggcgGCgCggaGCCGGCCGc -3'
miRNA:   3'- -AGGAGCCuuAGCA-----UG-Gag-CGGUUGGC- -5'
10994 5' -54.2 NC_002794.1 + 53719 0.77 0.543509
Target:  5'- cCCUCGGggUggaccCGcGCCaUCGCCGGCCGc -3'
miRNA:   3'- aGGAGCCuuA-----GCaUGG-AGCGGUUGGC- -5'
10994 5' -54.2 NC_002794.1 + 191767 0.76 0.567196
Target:  5'- cCCUCGGAAUCGU-CCgcgacgcucgaacguUCGCuCGACCGc -3'
miRNA:   3'- aGGAGCCUUAGCAuGG---------------AGCG-GUUGGC- -5'
10994 5' -54.2 NC_002794.1 + 73239 0.75 0.64345
Target:  5'- cUCCUCGGccacuccGUCGUcuccccgaccccACCUcCGCCGACCGc -3'
miRNA:   3'- -AGGAGCCu------UAGCA------------UGGA-GCGGUUGGC- -5'
10994 5' -54.2 NC_002794.1 + 143721 0.74 0.673591
Target:  5'- cCCggCGGGcGUCGU-CCUCGCCcGCCGg -3'
miRNA:   3'- aGGa-GCCU-UAGCAuGGAGCGGuUGGC- -5'
10994 5' -54.2 NC_002794.1 + 98989 0.73 0.713278
Target:  5'- gCCUCGGuGGUCGgcgGCUUCGUCAGCUu -3'
miRNA:   3'- aGGAGCC-UUAGCa--UGGAGCGGUUGGc -5'
10994 5' -54.2 NC_002794.1 + 72879 0.73 0.723055
Target:  5'- cUCCUCGGccgGGUCGcggcccuCCUCGCCA-CCGu -3'
miRNA:   3'- -AGGAGCC---UUAGCau-----GGAGCGGUuGGC- -5'
10994 5' -54.2 NC_002794.1 + 128367 0.71 0.815203
Target:  5'- aCCUCGGAAcgagcUCGgacgUCUCGCCGAucCCGg -3'
miRNA:   3'- aGGAGCCUU-----AGCau--GGAGCGGUU--GGC- -5'
10994 5' -54.2 NC_002794.1 + 75285 0.71 0.848021
Target:  5'- aCC-CGGccggcCGgcGCCUCGCCAGCCGa -3'
miRNA:   3'- aGGaGCCuua--GCa-UGGAGCGGUUGGC- -5'
10994 5' -54.2 NC_002794.1 + 96960 0.71 0.854234
Target:  5'- aCCUCGGccgacaccacCGUGCCUCGCgAGCgCGu -3'
miRNA:   3'- aGGAGCCuua-------GCAUGGAGCGgUUG-GC- -5'
10994 5' -54.2 NC_002794.1 + 82056 0.71 0.855768
Target:  5'- gCggCGGcGUCGUccucgGCCUCGCCGGCCc -3'
miRNA:   3'- aGgaGCCuUAGCA-----UGGAGCGGUUGGc -5'
10994 5' -54.2 NC_002794.1 + 54133 0.71 0.855768
Target:  5'- aUCUUCGGca-CGUugUUgGCCAGCCGc -3'
miRNA:   3'- -AGGAGCCuuaGCAugGAgCGGUUGGC- -5'
10994 5' -54.2 NC_002794.1 + 191140 0.7 0.870667
Target:  5'- cCCUCGaAGUCGUccagcACCUCGUCGuACCa -3'
miRNA:   3'- aGGAGCcUUAGCA-----UGGAGCGGU-UGGc -5'
10994 5' -54.2 NC_002794.1 + 80204 0.7 0.870667
Target:  5'- gCCUgGGcGGUCGacgacGCCUCGCCGcacACCGg -3'
miRNA:   3'- aGGAgCC-UUAGCa----UGGAGCGGU---UGGC- -5'
10994 5' -54.2 NC_002794.1 + 88743 0.7 0.877104
Target:  5'- aCCUCGGggUCGccgaggaauguggUGCCUgGCgucGCCGg -3'
miRNA:   3'- aGGAGCCuuAGC-------------AUGGAgCGgu-UGGC- -5'
10994 5' -54.2 NC_002794.1 + 154314 0.7 0.877808
Target:  5'- cUCCUCGGGagagcggcgucgGUCGUcCCgggUGCCGcgGCCGa -3'
miRNA:   3'- -AGGAGCCU------------UAGCAuGGa--GCGGU--UGGC- -5'
10994 5' -54.2 NC_002794.1 + 189761 0.69 0.904208
Target:  5'- -aCUCGGuuUCgGUGCaC-CGCCAGCCGc -3'
miRNA:   3'- agGAGCCuuAG-CAUG-GaGCGGUUGGC- -5'
10994 5' -54.2 NC_002794.1 + 116217 0.69 0.91606
Target:  5'- gCCUCGGccgcgcggcucgAGUCGaUGCC-CGCCGugCGc -3'
miRNA:   3'- aGGAGCC------------UUAGC-AUGGaGCGGUugGC- -5'
10994 5' -54.2 NC_002794.1 + 80720 0.69 0.91606
Target:  5'- gCCUUGGAcGUCG-ACCUgGCCcuCCGc -3'
miRNA:   3'- aGGAGCCU-UAGCaUGGAgCGGuuGGC- -5'
10994 5' -54.2 NC_002794.1 + 192354 0.69 0.91606
Target:  5'- aCCUCGGccUCc-GCCgcCGCCGACCGa -3'
miRNA:   3'- aGGAGCCuuAGcaUGGa-GCGGUUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.